-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_9/scaffold_9_14120741-14281410

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_9-snap.2850-T1
Valid prediction for snap_scaffold_9-snap.2842-T1
Valid prediction for snap_scaffold_9-snap.2859-T1
Valid prediction for GlimmerHMM_glimmerT_23299-T1
Valid prediction for snap_scaffold_9-snap.2840-T1
Valid prediction for Augustus_model.g15519.t1
Valid prediction for snap_scaffold_9-snap.2857-T1
Valid prediction for Augustus_model.g15513.t1
Valid prediction for snap_scaffold_9-snap.2858-T1
Valid prediction for Augustus_model.g15522.t1
Valid prediction for Augustus_model.g15518.t1
Valid prediction for snap_scaffold_9-snap.2819-T1
Valid prediction for snap_scaffold_9-snap.2830-T1
Valid prediction for snap_scaffold_9-snap.2852-T1
Valid prediction for GlimmerHMM_glimmerT_23292-T1
Valid prediction for snap_scaffold_9-snap.2821-T1
Valid prediction for snap_scaffold_9-snap.2833-T1
Valid prediction for snap_scaffold_9-snap.2843-T1
Valid prediction for GlimmerHMM_glimmerT_23294-T1
Valid prediction for GlimmerHMM_glimmerT_23285-T1
Valid prediction for snap_scaffold_9-snap.2845-T1
Valid prediction for snap_scaffold_9-snap.2862-T1
Valid prediction for snap_scaffold_9-snap.2849-T1
Valid prediction for snap_scaffold_9-snap.2838-T1
Valid prediction for Augustus_model.g15514.t1
Valid prediction for GlimmerHMM_glimmerT_23291-T1
Valid prediction for CodingQuarry_transcript_62400-T1
Valid prediction for GlimmerHMM_glimmerT_23283-T1
Valid prediction for snap_scaffold_9-snap.2825-T1
Valid prediction for GlimmerHMM_glimmerT_23289-T1
Valid prediction for snap_scaffold_9-snap.2855-T1
Valid prediction for Augustus_model.g15515.t1
Valid prediction for snap_scaffold_9-snap.2835-T1
Valid prediction for snap_scaffold_9-snap.2823-T1
Valid prediction for snap_scaffold_9-snap.2832-T1
Valid prediction for snap_scaffold_9-snap.2828-T1
Valid prediction for HiQ_model.g15523.t1
Valid prediction for GlimmerHMM_glimmerT_23300-T1
Valid prediction for snap_scaffold_9-snap.2818-T1
Valid prediction for snap_scaffold_9-snap.2848-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_9-snap.2854-T1
Valid prediction for snap_scaffold_9-snap.2847-T1
Valid prediction for snap_scaffold_9-snap.2860-T1
Valid prediction for Augustus_model.g15516.t1
Valid prediction for GlimmerHMM_glimmerT_23286-T1
Valid prediction for snap_scaffold_9-snap.2846-T1
Valid prediction for snap_scaffold_9-snap.2836-T1
Valid prediction for snap_scaffold_9-snap.2861-T1
Valid prediction for snap_scaffold_9-snap.2834-T1
Valid prediction for snap_scaffold_9-snap.2837-T1
Valid prediction for snap_scaffold_9-snap.2831-T1
Valid prediction for snap_scaffold_9-snap.2844-T1
Valid prediction for GlimmerHMM_glimmerT_23284-T1
Valid prediction for GlimmerHMM_glimmerT_23296-T1
Valid prediction for snap_scaffold_9-snap.2827-T1
Valid prediction for snap_scaffold_9-snap.2820-T1
Valid prediction for Augustus_model.g15520.t1
Valid prediction for GlimmerHMM_glimmerT_23295-T1
Valid prediction for GlimmerHMM_glimmerT_23293-T1
Valid prediction for snap_scaffold_9-snap.2856-T1
Valid prediction for GlimmerHMM_glimmerT_23297-T1
Valid prediction for GlimmerHMM_glimmerT_23298-T1
Valid prediction for snap_scaffold_9-snap.2826-T1
Valid prediction for snap_scaffold_9-snap.2817-T1
Valid prediction for snap_scaffold_9-snap.2822-T1
Valid prediction for snap_scaffold_9-snap.2841-T1
Valid prediction for snap_scaffold_9-snap.2824-T1
Valid prediction for Augustus_model.g15521.t1
Valid prediction for GlimmerHMM_glimmerT_23290-T1
Valid prediction for snap_scaffold_9-snap.2851-T1
Valid prediction for snap_scaffold_9-snap.2853-T1
Valid prediction for snap_scaffold_9-snap.2829-T1
Valid prediction for snap_scaffold_9-snap.2839-T1
Valid prediction for GlimmerHMM_glimmerT_23287-T1
Valid prediction for Augustus_model.g15517.t1
Valid prediction for GlimmerHMM_glimmerT_23288-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11947, rend_intergenic: 2318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21774, rend_intergenic: 14369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22649, rend_intergenic: 22066  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27637, rend_intergenic: 23410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31606, rend_intergenic: 29653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39359, rend_intergenic: 32362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43218, rend_intergenic: 41275  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45812, rend_intergenic: 44261  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49504, rend_intergenic: 47052  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52777, rend_intergenic: 50134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66692, rend_intergenic: 59499  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77368, rend_intergenic: 67055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82407, rend_intergenic: 78401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94160, rend_intergenic: 89832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99180, rend_intergenic: 94355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103401, rend_intergenic: 101293  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109493, rend_intergenic: 106400  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129335, rend_intergenic: 120229  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131107, rend_intergenic: 129823  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134455, rend_intergenic: 131192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149261, rend_intergenic: 134602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156131, rend_intergenic: 150282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 160670
-exon list size: 276


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.2    
2.5    
2.9    
3.2    
3.6    
4.0    
4.3    
4.7    
5.0    
5.4    
5.8    
6.1    
6.5    
6.8    
7.2    
7.6    
7.9    
8.3    
8.6    
9.0    
9.4    
9.7    
10.1    
10.4    
10.8    
11.2    
11.5    
11.9    
12.2    
12.6    
12.9    
13.3    
13.7    
14.0    
14.4    
14.7    
15.1    
15.5    
15.8    
16.2    
16.5    
16.9    
17.3    
17.6    
18.0    
18.3    
18.7    
19.1    
19.4    
19.8    
20.1    
20.5    
20.9    
21.2    
21.6    
21.9    
22.3    
22.7    
23.0    
23.4    
23.7    
24.1    
24.5    
24.8    
25.2    
25.5    
25.9    
26.3    
26.6    
27.0    
27.3    
27.7    
28.1    
28.4    
28.8    
29.1    
29.5    
29.9    
30.2    
30.6    
30.9    
31.3    
31.7    
32.0    
32.4    
32.7    
33.1    
33.5    
33.8    
34.2    
34.5    
34.9    
35.3    
35.6    
36.0    
36.3    
36.7    
37.1    
37.4    
37.8    
38.1    
38.5    
38.8    
39.2    
39.6    
39.9    
40.3    
40.6    
41.0    
41.4    
41.7    
42.1    
42.4    
42.8    
43.2    
43.5    
43.9    
44.2    
44.6    
45.0    
45.3    
45.7    
46.0    
46.4    
46.8    
47.1    
47.5    
47.8    
48.2    
48.6    
48.9    
49.3    
49.6    
50.0    
50.4    
50.7    
51.1    
51.4    
51.8    
52.2    
52.5    
52.9    
53.2    
53.6    
54.0    
54.3    
54.7    
55.0    
55.4    
55.8    
56.1    
56.5    
56.8    
57.2    
57.6    
57.9    
58.3    
58.6    
59.0    
59.4    
59.7    
60.1    
60.4    
60.8    
61.2    
61.5    
61.9    
62.2    
62.6    
62.9    
63.3    
63.7    
64.0    
64.4    
64.7    
65.1    
65.5    
65.8    
66.2    
66.5    
66.9    
67.3    
67.6    
68.0    
68.3    
68.7    
69.1    
69.4    
69.8    
70.1    
70.5    
70.9    
71.2    
71.6    
71.9    
72.3    
72.7    
73.0    
73.4    
73.7    
74.1    
74.5    
74.8    
75.2    
75.5    
75.9    
76.3    
76.6    
77.0    
77.3    
77.7    
78.1    
78.4    
78.8    
79.1    
79.5    
79.9    
80.2    
80.6    
80.9    
81.3    
81.7    
82.0    
82.4    
82.7    
83.1    
83.5    
83.8    
84.2    
84.5    
84.9    
85.3    
85.6    
86.0    
86.3    
86.7    
87.1    
87.4    
87.8    
88.1    
88.5    
88.8    
89.2    
89.6    
89.9    
90.3    
90.6    
91.0    
91.4    
91.7    
92.1    
92.4    
92.8    
93.2    
93.5    
93.9    
94.2    
94.6    
95.0    
95.3    
95.7    
96.0    
96.4    
96.8    
97.1    
97.5    
97.8    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 11947, rend_intergenic: 2318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21774, rend_intergenic: 14369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22649, rend_intergenic: 22066  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27637, rend_intergenic: 23410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31606, rend_intergenic: 29653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39359, rend_intergenic: 32362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43218, rend_intergenic: 41275  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45812, rend_intergenic: 44261  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49504, rend_intergenic: 47052  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52777, rend_intergenic: 50134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66692, rend_intergenic: 59499  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77368, rend_intergenic: 67055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82407, rend_intergenic: 78401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94160, rend_intergenic: 89832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99180, rend_intergenic: 94355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103401, rend_intergenic: 101293  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109493, rend_intergenic: 106400  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129335, rend_intergenic: 120229  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131107, rend_intergenic: 129823  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134455, rend_intergenic: 131192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149261, rend_intergenic: 134602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156131, rend_intergenic: 150282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support