-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_9/scaffold_9_140146-333508

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_21445-T1
Valid prediction for snap_scaffold_9-snap.63-T1
Valid prediction for GlimmerHMM_glimmerT_21443-T1
Valid prediction for GlimmerHMM_glimmerT_21455-T1
Valid prediction for snap_scaffold_9-snap.42-T1
Valid prediction for Augustus_model.g14287.t1
Valid prediction for Augustus_model.g14289.t1
Valid prediction for snap_scaffold_9-snap.39-T1
Valid prediction for GlimmerHMM_glimmerT_21465-T1
Valid prediction for snap_scaffold_9-snap.45-T1
Valid prediction for GlimmerHMM_glimmerT_21444-T1
Valid prediction for snap_scaffold_9-snap.61-T1
Valid prediction for snap_scaffold_9-snap.38-T1
Valid prediction for snap_scaffold_9-snap.44-T1
Valid prediction for snap_scaffold_9-snap.47-T1
Valid prediction for snap_scaffold_9-snap.56-T1
Valid prediction for snap_scaffold_9-snap.53-T1
Valid prediction for snap_scaffold_9-snap.73-T1
Valid prediction for snap_scaffold_9-snap.66-T1
Valid prediction for snap_scaffold_9-snap.64-T1
Valid prediction for GlimmerHMM_glimmerT_21448-T1
Valid prediction for GlimmerHMM_glimmerT_21461-T1
Valid prediction for GlimmerHMM_glimmerT_21451-T1
Valid prediction for snap_scaffold_9-snap.50-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_9-snap.58-T1
Valid prediction for snap_scaffold_9-snap.65-T1
Valid prediction for GlimmerHMM_glimmerT_21456-T1
Valid prediction for snap_scaffold_9-snap.51-T1
Valid prediction for GlimmerHMM_glimmerT_21463-T1
Valid prediction for Augustus_model.g14288.t1
Valid prediction for GlimmerHMM_glimmerT_21447-T1
Valid prediction for snap_scaffold_9-snap.70-T1
Valid prediction for GlimmerHMM_glimmerT_21458-T1
Valid prediction for GlimmerHMM_glimmerT_21446-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_21462-T1
Valid prediction for snap_scaffold_9-snap.48-T1
Valid prediction for snap_scaffold_9-snap.43-T1
Valid prediction for GlimmerHMM_glimmerT_21452-T1
Valid prediction for snap_scaffold_9-snap.62-T1
Valid prediction for snap_scaffold_9-snap.41-T1
Valid prediction for snap_scaffold_9-snap.69-T1
Valid prediction for GlimmerHMM_glimmerT_21460-T1
Valid prediction for snap_scaffold_9-snap.72-T1
Valid prediction for GlimmerHMM_glimmerT_21459-T1
Valid prediction for GlimmerHMM_glimmerT_21457-T1
Valid prediction for snap_scaffold_9-snap.74-T1
Valid prediction for snap_scaffold_9-snap.67-T1
Valid prediction for snap_scaffold_9-snap.76-T1
Valid prediction for snap_scaffold_9-snap.57-T1
Valid prediction for GlimmerHMM_glimmerT_21449-T1
Valid prediction for snap_scaffold_9-snap.60-T1
Valid prediction for GlimmerHMM_glimmerT_21464-T1
Valid prediction for snap_scaffold_9-snap.52-T1
Valid prediction for snap_scaffold_9-snap.71-T1
Valid prediction for snap_scaffold_9-snap.68-T1
Valid prediction for GlimmerHMM_glimmerT_21454-T1
Valid prediction for snap_scaffold_9-snap.55-T1
Valid prediction for snap_scaffold_9-snap.54-T1
Valid prediction for snap_scaffold_9-snap.49-T1
Valid prediction for snap_scaffold_9-snap.75-T1
Valid prediction for GlimmerHMM_glimmerT_21450-T1
Valid prediction for snap_scaffold_9-snap.59-T1
Valid prediction for GlimmerHMM_glimmerT_21453-T1
Valid prediction for snap_scaffold_9-snap.40-T1
Valid prediction for snap_scaffold_9-snap.46-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 26173, rend_intergenic: 10820  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37878, rend_intergenic: 27410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52861, rend_intergenic: 38690  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53932, rend_intergenic: 52943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57216, rend_intergenic: 54241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64654, rend_intergenic: 59779  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75762, rend_intergenic: 71285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78956, rend_intergenic: 77366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92613, rend_intergenic: 83879  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94397, rend_intergenic: 93349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98565, rend_intergenic: 94698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107450, rend_intergenic: 99358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107898, rend_intergenic: 107527  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117907, rend_intergenic: 111923  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159331, rend_intergenic: 134054  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164253, rend_intergenic: 160529  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168950, rend_intergenic: 164767  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192078, rend_intergenic: 168962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 193363
-exon list size: 210


building trellis

0.5    
0.9    
1.4    
1.9    
2.4    
2.8    
3.3    
3.8    
4.2    
4.7    
5.2    
5.7    
6.1    
6.6    
7.1    
7.5    
8.0    
8.5    
9.0    
9.4    
9.9    
10.4    
10.8    
11.3    
11.8    
12.3    
12.7    
13.2    
13.7    
14.2    
14.6    
15.1    
15.6    
16.0    
16.5    
17.0    
17.5    
17.9    
18.4    
18.9    
19.3    
19.8    
20.3    
20.8    
21.2    
21.7    
22.2    
22.6    
23.1    
23.6    
24.1    
24.5    
25.0    
25.5    
25.9    
26.4    
26.9    
27.4    
27.8    
28.3    
28.8    
29.2    
29.7    
30.2    
30.7    
31.1    
31.6    
32.1    
32.5    
33.0    
33.5    
34.0    
34.4    
34.9    
35.4    
35.8    
36.3    
36.8    
37.3    
37.7    
38.2    
38.7    
39.2    
39.6    
40.1    
40.6    
41.0    
41.5    
42.0    
42.5    
42.9    
43.4    
43.9    
44.3    
44.8    
45.3    
45.8    
46.2    
46.7    
47.2    
47.6    
48.1    
48.6    
49.1    
49.5    
50.0    
50.5    
50.9    
51.4    
51.9    
52.4    
52.8    
53.3    
53.8    
54.2    
54.7    
55.2    
55.7    
56.1    
56.6    
57.1    
57.5    
58.0    
58.5    
59.0    
59.4    
59.9    
60.4    
60.8    
61.3    
61.8    
62.3    
62.7    
63.2    
63.7    
64.2    
64.6    
65.1    
65.6    
66.0    
66.5    
67.0    
67.5    
67.9    
68.4    
68.9    
69.3    
69.8    
70.3    
70.8    
71.2    
71.7    
72.2    
72.6    
73.1    
73.6    
74.1    
74.5    
75.0    
75.5    
75.9    
76.4    
76.9    
77.4    
77.8    
78.3    
78.8    
79.2    
79.7    
80.2    
80.7    
81.1    
81.6    
82.1    
82.5    
83.0    
83.5    
84.0    
84.4    
84.9    
85.4    
85.8    
86.3    
86.8    
87.3    
87.7    
88.2    
88.7    
89.2    
89.6    
90.1    
90.6    
91.0    
91.5    
92.0    
92.5    
92.9    
93.4    
93.9    
94.3    
94.8    
95.3    
95.8    
96.2    
96.7    
97.2    
97.6    
98.1    
98.6    
99.1    
99.5    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 26173, rend_intergenic: 10820  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37878, rend_intergenic: 27410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52861, rend_intergenic: 38690  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53932, rend_intergenic: 52943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57216, rend_intergenic: 54241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64654, rend_intergenic: 59779  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75762, rend_intergenic: 71285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78956, rend_intergenic: 77366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92613, rend_intergenic: 83879  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94397, rend_intergenic: 93349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98565, rend_intergenic: 94698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107450, rend_intergenic: 99358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107898, rend_intergenic: 107527  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117907, rend_intergenic: 111923  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159331, rend_intergenic: 134054  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164253, rend_intergenic: 160529  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168950, rend_intergenic: 164767  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192078, rend_intergenic: 168962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support