-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_9/scaffold_9_13401924-13566390

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_9-snap.2665-T1
Valid prediction for snap_scaffold_9-snap.2685-T1
Valid prediction for snap_scaffold_9-snap.2658-T1
Valid prediction for Augustus_model.g15473.t1
Valid prediction for GlimmerHMM_glimmerT_23201-T1
Valid prediction for GlimmerHMM_glimmerT_23205-T1
Valid prediction for GlimmerHMM_glimmerT_23180-T1
Valid prediction for Augustus_model.g15471.t1
Valid prediction for Augustus_model.g15469.t1
Valid prediction for GlimmerHMM_glimmerT_23190-T1
Valid prediction for snap_scaffold_9-snap.2678-T1
Valid prediction for GlimmerHMM_glimmerT_23188-T1
Valid prediction for GlimmerHMM_glimmerT_23182-T1
Couldn't classify 15430, 15768
Sorry, prediction pasa_asmbl_54497.p1 fails validation.
(GAA)	 GC	15430-15768	CA	GGC
Valid prediction for Augustus_model.g15466.t1
Valid prediction for snap_scaffold_9-snap.2680-T1
Valid prediction for snap_scaffold_9-snap.2662-T1
Valid prediction for snap_scaffold_9-snap.2679-T1
Couldn't classify 15901, 16197
Sorry, prediction pasa_asmbl_54498.p2 fails validation.
(GGA)	 AG	15901-16197	GG	ACG
Valid prediction for GlimmerHMM_glimmerT_23204-T1
Valid prediction for snap_scaffold_9-snap.2683-T1
Valid prediction for snap_scaffold_9-snap.2660-T1
Valid prediction for GlimmerHMM_glimmerT_23202-T1
Valid prediction for Augustus_model.g15470.t1
Valid prediction for snap_scaffold_9-snap.2670-T1
Valid prediction for Augustus_model.g15461.t1
Valid prediction for GlimmerHMM_glimmerT_23186-T1
Valid prediction for snap_scaffold_9-snap.2673-T1
Valid prediction for GlimmerHMM_glimmerT_23203-T1
Valid prediction for GlimmerHMM_glimmerT_23189-T1
Valid prediction for GlimmerHMM_glimmerT_23192-T1
Valid prediction for snap_scaffold_9-snap.2656-T1
Valid prediction for snap_scaffold_9-snap.2682-T1
Valid prediction for snap_scaffold_9-snap.2676-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g15464.t1
Valid prediction for GlimmerHMM_glimmerT_23197-T1
Couldn't classify 75893, 76234
Sorry, prediction pasa_asmbl_55445.p1 fails validation.
(CTT)	 GA	75893-76234	GG	AAG
Valid prediction for snap_scaffold_9-snap.2681-T1
Valid prediction for snap_scaffold_9-snap.2668-T1
Valid prediction for GlimmerHMM_glimmerT_23198-T1
Valid prediction for snap_scaffold_9-snap.2664-T1
Valid prediction for snap_scaffold_9-snap.2663-T1
Valid prediction for snap_scaffold_9-snap.2675-T1
Valid prediction for Augustus_model.g15462.t1
Valid prediction for snap_scaffold_9-snap.2654-T1
Valid prediction for snap_scaffold_9-snap.2671-T1
Valid prediction for Augustus_model.g15468.t1
Valid prediction for snap_scaffold_9-snap.2655-T1
Valid prediction for GlimmerHMM_glimmerT_23184-T1
Valid prediction for Augustus_model.g15472.t1
Valid prediction for snap_scaffold_9-snap.2657-T1
Valid prediction for snap_scaffold_9-snap.2677-T1
Valid prediction for GlimmerHMM_glimmerT_23195-T1
Valid prediction for GlimmerHMM_glimmerT_23193-T1
Valid prediction for Augustus_model.g15463.t1
Valid prediction for GlimmerHMM_glimmerT_23200-T1
Valid prediction for Augustus_model.g15465.t1
Valid prediction for GlimmerHMM_glimmerT_23187-T1
Valid prediction for snap_scaffold_9-snap.2667-T1
Valid prediction for snap_scaffold_9-snap.2674-T1
Valid prediction for GlimmerHMM_glimmerT_23183-T1
Valid prediction for snap_scaffold_9-snap.2686-T1
Valid prediction for snap_scaffold_9-snap.2669-T1
Valid prediction for snap_scaffold_9-snap.2659-T1
Valid prediction for GlimmerHMM_glimmerT_23199-T1
Valid prediction for snap_scaffold_9-snap.2666-T1
Valid prediction for snap_scaffold_9-snap.2672-T1
Valid prediction for GlimmerHMM_glimmerT_23194-T1
Valid prediction for GlimmerHMM_glimmerT_23181-T1
Valid prediction for Augustus_model.g15467.t1
Valid prediction for snap_scaffold_9-snap.2684-T1
Valid prediction for snap_scaffold_9-snap.2661-T1
Valid prediction for GlimmerHMM_glimmerT_23185-T1
Valid prediction for GlimmerHMM_glimmerT_23191-T1
Valid prediction for GlimmerHMM_glimmerT_23196-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15375, rend_intergenic: 10420  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16404, rend_intergenic: 15805  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24798, rend_intergenic: 17733  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30848, rend_intergenic: 26365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42419, rend_intergenic: 40944  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47563, rend_intergenic: 43266  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50849, rend_intergenic: 48832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71720, rend_intergenic: 67396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83033, rend_intergenic: 81895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118651, rend_intergenic: 110417  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132900, rend_intergenic: 119210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137670, rend_intergenic: 136481  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153286, rend_intergenic: 144140  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 164467
-exon list size: 380


building trellis

0.3    
0.5    
0.8    
1.0    
1.3    
1.6    
1.8    
2.1    
2.4    
2.6    
2.9    
3.1    
3.4    
3.7    
3.9    
4.2    
4.5    
4.7    
5.0    
5.2    
5.5    
5.8    
6.0    
6.3    
6.5    
6.8    
7.1    
7.3    
7.6    
7.9    
8.1    
8.4    
8.6    
8.9    
9.2    
9.4    
9.7    
9.9    
10.2    
10.5    
10.7    
11.0    
11.3    
11.5    
11.8    
12.0    
12.3    
12.6    
12.8    
13.1    
13.4    
13.6    
13.9    
14.1    
14.4    
14.7    
14.9    
15.2    
15.4    
15.7    
16.0    
16.2    
16.5    
16.8    
17.0    
17.3    
17.5    
17.8    
18.1    
18.3    
18.6    
18.8    
19.1    
19.4    
19.6    
19.9    
20.2    
20.4    
20.7    
20.9    
21.2    
21.5    
21.7    
22.0    
22.3    
22.5    
22.8    
23.0    
23.3    
23.6    
23.8    
24.1    
24.3    
24.6    
24.9    
25.1    
25.4    
25.7    
25.9    
26.2    
26.4    
26.7    
27.0    
27.2    
27.5    
27.7    
28.0    
28.3    
28.5    
28.8    
29.1    
29.3    
29.6    
29.8    
30.1    
30.4    
30.6    
30.9    
31.2    
31.4    
31.7    
31.9    
32.2    
32.5    
32.7    
33.0    
33.2    
33.5    
33.8    
34.0    
34.3    
34.6    
34.8    
35.1    
35.3    
35.6    
35.9    
36.1    
36.4    
36.6    
36.9    
37.2    
37.4    
37.7    
38.0    
38.2    
38.5    
38.7    
39.0    
39.3    
39.5    
39.8    
40.1    
40.3    
40.6    
40.8    
41.1    
41.4    
41.6    
41.9    
42.1    
42.4    
42.7    
42.9    
43.2    
43.5    
43.7    
44.0    
44.2    
44.5    
44.8    
45.0    
45.3    
45.5    
45.8    
46.1    
46.3    
46.6    
46.9    
47.1    
47.4    
47.6    
47.9    
48.2    
48.4    
48.7    
49.0    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.0    
51.3    
51.6    
51.8    
52.1    
52.4    
52.6    
52.9    
53.1    
53.4    
53.7    
53.9    
54.2    
54.5    
54.7    
55.0    
55.2    
55.5    
55.8    
56.0    
56.3    
56.5    
56.8    
57.1    
57.3    
57.6    
57.9    
58.1    
58.4    
58.6    
58.9    
59.2    
59.4    
59.7    
59.9    
60.2    
60.5    
60.7    
61.0    
61.3    
61.5    
61.8    
62.0    
62.3    
62.6    
62.8    
63.1    
63.4    
63.6    
63.9    
64.1    
64.4    
64.7    
64.9    
65.2    
65.4    
65.7    
66.0    
66.2    
66.5    
66.8    
67.0    
67.3    
67.5    
67.8    
68.1    
68.3    
68.6    
68.8    
69.1    
69.4    
69.6    
69.9    
70.2    
70.4    
70.7    
70.9    
71.2    
71.5    
71.7    
72.0    
72.3    
72.5    
72.8    
73.0    
73.3    
73.6    
73.8    
74.1    
74.3    
74.6    
74.9    
75.1    
75.4    
75.7    
75.9    
76.2    
76.4    
76.7    
77.0    
77.2    
77.5    
77.7    
78.0    
78.3    
78.5    
78.8    
79.1    
79.3    
79.6    
79.8    
80.1    
80.4    
80.6    
80.9    
81.2    
81.4    
81.7    
81.9    
82.2    
82.5    
82.7    
83.0    
83.2    
83.5    
83.8    
84.0    
84.3    
84.6    
84.8    
85.1    
85.3    
85.6    
85.9    
86.1    
86.4    
86.6    
86.9    
87.2    
87.4    
87.7    
88.0    
88.2    
88.5    
88.7    
89.0    
89.3    
89.5    
89.8    
90.1    
90.3    
90.6    
90.8    
91.1    
91.4    
91.6    
91.9    
92.1    
92.4    
92.7    
92.9    
93.2    
93.5    
93.7    
94.0    
94.2    
94.5    
94.8    
95.0    
95.3    
95.5    
95.8    
96.1    
96.3    
96.6    
96.9    
97.1    
97.4    
97.6    
97.9    
98.2    
98.4    
98.7    
99.0    
99.2    
99.5    
99.7    
-found 20 predictions from path traversal
Error with prediction: snap lend_intergenic: 15375, rend_intergenic: 10420  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16404, rend_intergenic: 15805  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24798, rend_intergenic: 17733  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30848, rend_intergenic: 26365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42419, rend_intergenic: 40944  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47563, rend_intergenic: 43266  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50849, rend_intergenic: 48832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71720, rend_intergenic: 67396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83033, rend_intergenic: 81895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118651, rend_intergenic: 110417  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132900, rend_intergenic: 119210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137670, rend_intergenic: 136481  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153286, rend_intergenic: 144140  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support