-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_9/scaffold_9_10741818-11062265

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 160745, 160780
Couldn't classify 167357, 167397
Sorry, prediction pasa_asmbl_54304.p1 fails validation.
(CAG)	 TT	160745-160780	GT	AGG
(TAT)	 AG	162739-162775	GT	AGG
(CCA)	 AG	164443-164616	GT	TGG
(CTG)	 AG	164853-164926	GT	TGG
(GCT)	 AG	165082-165183	GT	AGG
(GCC)	 AG	165267-165325	GT	ATG
(CCT)	 AG	165476-165558	GT	TGG
(ATG)	 AG	165668-165718	GT	ATG
(CGT)	 AG	165968-166056	GT	CCG
(TCT)	 AG	166647-166815	GT	CTG
(ATG)	 AG	167357-167397	GA	GTG
add_exon() Sorry, pasa_asmbl_54304.p1 165668-165718-initial-1 is invalid.
-recovered pasa_asmbl_54304.p1, initial, 165668, 165718
-recovered pasa_asmbl_54304.p1, internal, 162739, 162775
-recovered pasa_asmbl_54304.p1, internal, 164443, 164616
-recovered pasa_asmbl_54304.p1, internal, 164853, 164926
-recovered pasa_asmbl_54304.p1, internal, 165082, 165183
-recovered pasa_asmbl_54304.p1, internal, 165267, 165325
-recovered pasa_asmbl_54304.p1, internal, 165476, 165558
-recovered pasa_asmbl_54304.p1, internal, 165668, 165718
-recovered pasa_asmbl_54304.p1, internal, 165968, 166056
-recovered pasa_asmbl_54304.p1, internal, 166647, 166815
Couldn't classify 180663, 180764
Sorry, prediction pasa_asmbl_54315.p1 fails validation.
(TAC)	 GT	180663-180764	GT	CGG
(ATG)	 AG	181093-181254	GT	AGG
(AGT)	 AG	181501-181732	GT	AGG
(GTA)	 AG	181877-181962	GT	AGG
(GAA)	 AG	182176-182384	GT	CGG
(ACG)	 AG	182670-182787	GT	AGG
(GAA)	 AG	183046-183187	GT	TGG
(CCC)	 AG	183365-183531	GT	AGG
(CTG)	 AG	183803-183902	GT	CGG
(GGA)	 AG	184342-184580	GT	AGG
(AGG)	 AG	186221-186241	AG	GAA
-recovered pasa_asmbl_54315.p1, initial, 181093, 181254
-recovered pasa_asmbl_54315.p1, terminal, 186221, 186241
-recovered pasa_asmbl_54315.p1, internal, 181093, 181254
-recovered pasa_asmbl_54315.p1, internal, 181501, 181732
-recovered pasa_asmbl_54315.p1, internal, 181877, 181962
-recovered pasa_asmbl_54315.p1, internal, 182176, 182384
-recovered pasa_asmbl_54315.p1, internal, 182670, 182787
-recovered pasa_asmbl_54315.p1, internal, 183046, 183187
-recovered pasa_asmbl_54315.p1, internal, 183365, 183531
-recovered pasa_asmbl_54315.p1, internal, 183803, 183902
-recovered pasa_asmbl_54315.p1, internal, 184342, 184580
Valid prediction for GlimmerHMM_glimmerT_22838-T1
Valid prediction for Augustus_model.g15204.t1
Valid prediction for Augustus_model.g15202.t1
Valid prediction for Augustus_model.g15201.t1
Valid prediction for GlimmerHMM_glimmerT_22841-T1
Valid prediction for CodingQuarry_transcript_62296-T1
Valid prediction for Augustus_model.g15195.t1
Valid prediction for snap_scaffold_9-snap.2132-T1
Valid prediction for snap_scaffold_9-snap.2134-T1
Valid prediction for HiQ_model.g15197.t1
Valid prediction for snap_scaffold_9-snap.2127-T1
Valid prediction for GlimmerHMM_glimmerT_22836-T1
Valid prediction for GlimmerHMM_glimmerT_22827-T1
Valid prediction for snap_scaffold_9-snap.2147-T1
Valid prediction for HiQ_model.g15211.t1
Valid prediction for pasa_asmbl_54322.p1
Couldn't classify 190960, 191274
Sorry, prediction pasa_asmbl_54316.p2 fails validation.
(GGC)	 TG	190960-191274	AT	AAA
Couldn't classify 292240, 292298
Couldn't classify 292682, 292873
Sorry, prediction pasa_asmbl_54326.p1 fails validation.
(TAC)	 CC	292240-292298	GT	AGG
(TGT)	 AG	292387-292513	GT	AGG
(GTG)	 AG	292682-292873	GG	AAG
-recovered pasa_asmbl_54326.p1, internal, 292387, 292513
Valid prediction for GlimmerHMM_glimmerT_22835-T1
Valid prediction for snap_scaffold_9-snap.2173-T1
Couldn't classify 188058, 188148
Couldn't classify 189820, 189852
Sorry, prediction pasa_asmbl_54761.p1 fails validation.
(CCA)	 AA	188058-188148	GT	TGG
(GCA)	 AG	188591-188676	GT	AGG
(GAA)	 AG	188987-189195	GT	AGG
(ACG)	 AG	189471-189588	GT	TCG
(GAA)	 AG	189820-189852	GA	CAG
-recovered pasa_asmbl_54761.p1, internal, 188591, 188676
-recovered pasa_asmbl_54761.p1, internal, 188987, 189195
-recovered pasa_asmbl_54761.p1, internal, 189471, 189588
Valid prediction for snap_scaffold_9-snap.2119-T1
Valid prediction for HiQ_model.g15209.t1
Valid prediction for snap_scaffold_9-snap.2133-T1
Valid prediction for HiQ_model.g15198.t1
Valid prediction for CodingQuarry_transcript_62298-T1
Valid prediction for snap_scaffold_9-snap.2130-T1
Valid prediction for snap_scaffold_9-snap.2167-T1
Valid prediction for snap_scaffold_9-snap.2125-T1
Valid prediction for snap_scaffold_9-snap.2157-T1
Valid prediction for GlimmerHMM_glimmerT_22846-T1
Valid prediction for snap_scaffold_9-snap.2142-T1
Valid prediction for CodingQuarry_transcript_62304-T1
Valid prediction for CodingQuarry_transcript_62302-T1
Valid prediction for HiQ_model.g15196.t1
Valid prediction for Augustus_model.g15212.t1
Valid prediction for GlimmerHMM_glimmerT_22847-T1
Valid prediction for snap_scaffold_9-snap.2169-T1
Valid prediction for Augustus_model.g15194.t1
Valid prediction for GlimmerHMM_glimmerT_22837-T1
Valid prediction for Augustus_model.g15213.t1
Valid prediction for GlimmerHMM_glimmerT_22825-T1
Valid prediction for snap_scaffold_9-snap.2171-T1
Valid prediction for snap_scaffold_9-snap.2153-T1
Valid prediction for Augustus_model.g15193.t1
Valid prediction for Augustus_model.g15199.t1
Valid prediction for snap_scaffold_9-snap.2155-T1
Valid prediction for snap_scaffold_9-snap.2161-T1
Couldn't classify 288203, 288365
Sorry, prediction pasa_asmbl_54323.p1 fails validation.
(ATG)	 CC	287731-287839	GT	AGG
(CAA)	 AG	287934-288102	GT	GGG
(AGC)	 AG	288203-288365	GG	GGG
-recovered pasa_asmbl_54323.p1, initial, 287731, 287839
-recovered pasa_asmbl_54323.p1, internal, 287934, 288102
Valid prediction for GlimmerHMM_glimmerT_22839-T1
Valid prediction for GlimmerHMM_glimmerT_22849-T1
Valid prediction for pasa_asmbl_54329.p1
Valid prediction for snap_scaffold_9-snap.2151-T1
Valid prediction for GlimmerHMM_glimmerT_22832-T1
Couldn't classify 291658, 291714
Couldn't classify 292135, 292179
Sorry, prediction pasa_asmbl_54325.p1 fails validation.
(ATC)	 CC	291658-291714	GT	AGG
(GTG)	 AG	291847-292053	GT	AGG
(GAT)	 AG	292135-292179	AC	CCA
-recovered pasa_asmbl_54325.p1, internal, 291847, 292053
Couldn't classify 212614, 213489
Sorry, prediction pasa_asmbl_54318.p2 fails validation.
(ATG)	 CC	212614-213489	TA	AGT
Valid prediction for snap_scaffold_9-snap.2170-T1
Couldn't classify 294443, 294457
Sorry, prediction pasa_asmbl_54327.p1 fails validation.
(ATG)	 AG	293122-293232	GT	AGG
(GAC)	 AG	293461-293699	GT	AGG
(GTT)	 AG	293859-294005	GT	CTG
(CGG)	 AG	294126-294336	GT	AGG
(GTA)	 AG	294443-294457	AC	GGA
-recovered pasa_asmbl_54327.p1, initial, 293122, 293232
-recovered pasa_asmbl_54327.p1, internal, 293122, 293232
-recovered pasa_asmbl_54327.p1, internal, 293461, 293699
-recovered pasa_asmbl_54327.p1, internal, 293859, 294005
-recovered pasa_asmbl_54327.p1, internal, 294126, 294336
Valid prediction for snap_scaffold_9-snap.2138-T1
Valid prediction for snap_scaffold_9-snap.2164-T1
Valid prediction for pasa_asmbl_54308.p1
Valid prediction for snap_scaffold_9-snap.2140-T1
Valid prediction for snap_scaffold_9-snap.2162-T1
Valid prediction for GlimmerHMM_glimmerT_22830-T1
Valid prediction for snap_scaffold_9-snap.2158-T1
Valid prediction for pasa_asmbl_54293.p1
Valid prediction for Augustus_model.g15186.t1
Valid prediction for Augustus_model.g15200.t1
Valid prediction for GlimmerHMM_glimmerT_22840-T1
Valid prediction for snap_scaffold_9-snap.2148-T1
Valid prediction for snap_scaffold_9-snap.2143-T1
Couldn't classify 312231, 312282
Sorry, prediction pasa_asmbl_54331.p1 fails validation.
(GAC)	 GT	312231-312282	GT	CAG
(GTG)	 AG	312467-312578	GT	AGG
(GGT)	 AG	312659-312786	GT	AGG
(TTT)	 AG	312941-313078	GT	AGG
(ACA)	 AG	313373-314514	CA	AAC
-recovered pasa_asmbl_54331.p1, terminal, 313373, 314514
-recovered pasa_asmbl_54331.p1, internal, 312467, 312578
-recovered pasa_asmbl_54331.p1, internal, 312659, 312786
-recovered pasa_asmbl_54331.p1, internal, 312941, 313078
Couldn't classify 289154, 289272
Couldn't classify 290383, 290551
Sorry, prediction pasa_asmbl_54324.p1 fails validation.
(GAC)	 AG	289154-289272	GT	TGG
(GTA)	 AG	289370-289475	GT	AAG
(AGC)	 AG	289788-289978	GT	TGG
(GTA)	 AG	290164-290283	GT	AGG
(GTA)	 AG	290383-290551	GT	CCG
-recovered pasa_asmbl_54324.p1, internal, 289154, 289272
-recovered pasa_asmbl_54324.p1, internal, 289370, 289475
-recovered pasa_asmbl_54324.p1, internal, 289788, 289978
-recovered pasa_asmbl_54324.p1, internal, 290164, 290283
-recovered pasa_asmbl_54324.p1, internal, 290383, 290551
Valid prediction for HiQ_model.g15191.t1
Couldn't classify 136059, 136275
Couldn't classify 136703, 137118
Sorry, prediction pasa_asmbl_54297.p2 fails validation.
(CTG)	 AC	136059-136275	GT	AGG
(CCT)	 AG	136703-137118	GA	TTG
Valid prediction for GlimmerHMM_glimmerT_22834-T1
Valid prediction for GlimmerHMM_glimmerT_22848-T1
Valid prediction for snap_scaffold_9-snap.2145-T1
Valid prediction for snap_scaffold_9-snap.2156-T1
Couldn't classify 126379, 126541
Couldn't classify 127856, 127999
Sorry, prediction pasa_asmbl_54295.p1 fails validation.
(CTG)	 CT	126379-126541	GT	TGG
(TTT)	 AG	126751-126929	GT	AGG
(GCC)	 AG	127622-127762	GT	CGG
(GTG)	 AG	127856-127999	CA	CCC
-recovered pasa_asmbl_54295.p1, internal, 126751, 126929
-recovered pasa_asmbl_54295.p1, internal, 127622, 127762
Valid prediction for Augustus_model.g15188.t1
Valid prediction for snap_scaffold_9-snap.2163-T1
Valid prediction for snap_scaffold_9-snap.2120-T1
Valid prediction for snap_scaffold_9-snap.2154-T1
Valid prediction for snap_scaffold_9-snap.2116-T1
Sorry, intron length (8) is less than minimum required (10)
Couldn't classify 312176, 312185
Sorry, prediction pasa_asmbl_54330.p2 fails validation.
(ATG)	 AA	309821-309918	GT	AGG
(AGA)	 AG	310066-310127	GT	ACG
(CCG)	 AG	310263-310364	GT	GCG
(GCT)	 AG	310640-311177	GT	AGG
(CTG)	 AG	311394-311612	GT	AAG
(CTG)	 AG	311783-311911	GT	AGG
(CTG)	 AG	312176-312185	AC	GCA
-recovered pasa_asmbl_54330.p2, initial, 309821, 309918
add_exon() Sorry, pasa_asmbl_54330.p2 311394-311612-terminal-1 is invalid.
-recovered pasa_asmbl_54330.p2, terminal, 311394, 311612
-recovered pasa_asmbl_54330.p2, internal, 310066, 310127
-recovered pasa_asmbl_54330.p2, internal, 310263, 310364
-recovered pasa_asmbl_54330.p2, internal, 310640, 311177
-recovered pasa_asmbl_54330.p2, internal, 311394, 311612
-recovered pasa_asmbl_54330.p2, internal, 311783, 311911
Couldn't classify 294298, 294336
Sorry, prediction pasa_asmbl_54328.p1 fails validation.
(TTC)	 AG	294298-294336	GT	AGG
(GTA)	 AG	294443-294559	GT	AGG
(ATT)	 AG	294654-294901	GT	AGG
(GTG)	 AG	295092-295271	GT	AGG
(GCG)	 AG	295403-295538	GT	AGG
(GTT)	 AG	295694-295863	GT	TGG
(GGA)	 AG	296063-296192	GT	ACG
(GTG)	 AG	296334-296480	GT	AGG
(GTG)	 AG	296596-296756	GT	AAG
(GGA)	 AG	296964-297155	GT	AGG
(CGG)	 AG	297401-297638	GT	AGG
(ACC)	 AG	297879-298007	GT	AGG
(CTG)	 AG	298104-298217	GT	AGG
(GTC)	 AG	298363-298536	GT	CGG
(GCG)	 AG	298764-298957	GT	AAG
(TGT)	 AG	299147-299386	GT	AGG
(GGC)	 AG	299506-299647	GT	AGG
(ATT)	 AG	299769-299909	GT	AGG
(GAG)	 AG	300005-300144	GT	AGG
(TTT)	 AG	300414-300616	GT	GGG
(GTG)	 AG	300804-300958	GG	AAG
-recovered pasa_asmbl_54328.p1, terminal, 300804, 300958
-recovered pasa_asmbl_54328.p1, internal, 294298, 294336
-recovered pasa_asmbl_54328.p1, internal, 294443, 294559
-recovered pasa_asmbl_54328.p1, internal, 294654, 294901
-recovered pasa_asmbl_54328.p1, internal, 295092, 295271
-recovered pasa_asmbl_54328.p1, internal, 295403, 295538
-recovered pasa_asmbl_54328.p1, internal, 295694, 295863
-recovered pasa_asmbl_54328.p1, internal, 296063, 296192
-recovered pasa_asmbl_54328.p1, internal, 296334, 296480
-recovered pasa_asmbl_54328.p1, internal, 296596, 296756
-recovered pasa_asmbl_54328.p1, internal, 296964, 297155
-recovered pasa_asmbl_54328.p1, internal, 297401, 297638
-recovered pasa_asmbl_54328.p1, internal, 297879, 298007
-recovered pasa_asmbl_54328.p1, internal, 298104, 298217
-recovered pasa_asmbl_54328.p1, internal, 298363, 298536
-recovered pasa_asmbl_54328.p1, internal, 298764, 298957
-recovered pasa_asmbl_54328.p1, internal, 299147, 299386
-recovered pasa_asmbl_54328.p1, internal, 299506, 299647
-recovered pasa_asmbl_54328.p1, internal, 299769, 299909
-recovered pasa_asmbl_54328.p1, internal, 300005, 300144
-recovered pasa_asmbl_54328.p1, internal, 300414, 300616
Valid prediction for CodingQuarry_transcript_62299-T1
Valid prediction for snap_scaffold_9-snap.2135-T1
Couldn't classify 129781, 129957
Couldn't classify 130968, 131068
Sorry, prediction pasa_asmbl_54296.p1 fails validation.
(CCC)	 AG	129781-129957	GT	AGG
(AAC)	 AG	130076-130157	GT	GGG
(TCC)	 AG	130341-130415	GT	AGG
(TCC)	 AG	130968-131068	TA	AGT
-recovered pasa_asmbl_54296.p1, internal, 129781, 129957
-recovered pasa_asmbl_54296.p1, internal, 130076, 130157
-recovered pasa_asmbl_54296.p1, internal, 130341, 130415
Valid prediction for snap_scaffold_9-snap.2146-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_22850-T1
Valid prediction for snap_scaffold_9-snap.2136-T1
Valid prediction for snap_scaffold_9-snap.2159-T1
Valid prediction for GlimmerHMM_glimmerT_22829-T1
Valid prediction for Augustus_model.g15189.t1
Valid prediction for GlimmerHMM_glimmerT_22843-T1
Valid prediction for snap_scaffold_9-snap.2165-T1
Valid prediction for GlimmerHMM_glimmerT_22831-T1
Valid prediction for pasa_asmbl_55268.p1
Valid prediction for CodingQuarry_transcript_62295-T1
Valid prediction for Augustus_model.g15203.t1
Valid prediction for snap_scaffold_9-snap.2139-T1
Couldn't classify 311842, 311965
Couldn't classify 313289, 313388
Sorry, prediction pasa_asmbl_55256.p1 fails validation.
(AAA)	 GC	311842-311965	GT	AGG
(ACC)	 AG	312348-312513	GT	CGG
(GAC)	 AG	313289-313388	CG	GAC
-recovered pasa_asmbl_55256.p1, internal, 312348, 312513
Valid prediction for GlimmerHMM_glimmerT_22828-T1
Valid prediction for GlimmerHMM_glimmerT_22826-T1
Valid prediction for snap_scaffold_9-snap.2174-T1
Valid prediction for Augustus_model.g15210.t1
Valid prediction for CodingQuarry_transcript_62297-T1
Valid prediction for snap_scaffold_9-snap.2115-T1
Valid prediction for snap_scaffold_9-snap.2160-T1
Valid prediction for Augustus_model.g15184.t1
Valid prediction for Augustus_model.g15192.t1
Valid prediction for snap_scaffold_9-snap.2129-T1
Valid prediction for CodingQuarry_transcript_62303-T1
Valid prediction for snap_scaffold_9-snap.2149-T1
Valid prediction for snap_scaffold_9-snap.2172-T1
Valid prediction for snap_scaffold_9-snap.2137-T1
Valid prediction for snap_scaffold_9-snap.2144-T1
Valid prediction for HiQ_model.g15208.t1
Couldn't classify 237685, 237785
Sorry, prediction pasa_asmbl_55258.p1 fails validation.
(ATG)	 TC	236400-236470	GT	ACG
(GGA)	 AG	236814-236868	GT	AGG
(GCG)	 AG	237075-237150	GT	TGG
(ACA)	 AG	237685-237785	AT	GCA
-recovered pasa_asmbl_55258.p1, initial, 236400, 236470
-recovered pasa_asmbl_55258.p1, internal, 236814, 236868
-recovered pasa_asmbl_55258.p1, internal, 237075, 237150
Valid prediction for GlimmerHMM_glimmerT_22833-T1
Valid prediction for snap_scaffold_9-snap.2122-T1
Valid prediction for GlimmerHMM_glimmerT_22823-T1
Valid prediction for Augustus_model.g15205.t1
Valid prediction for snap_scaffold_9-snap.2123-T1
Valid prediction for GlimmerHMM_glimmerT_22844-T1
Valid prediction for Augustus_model.g15182.t1
Valid prediction for snap_scaffold_9-snap.2118-T1
Valid prediction for Augustus_model.g15185.t1
Valid prediction for Augustus_model.g15206.t1
Valid prediction for GlimmerHMM_glimmerT_22842-T1
Valid prediction for pasa_asmbl_55264.p1
Valid prediction for snap_scaffold_9-snap.2124-T1
Valid prediction for Augustus_model.g15183.t1
Valid prediction for GlimmerHMM_glimmerT_22845-T1
Valid prediction for CodingQuarry_transcript_62301-T1
Valid prediction for snap_scaffold_9-snap.2117-T1
Valid prediction for pasa_asmbl_55259.p1
Valid prediction for Augustus_model.g15214.t1
Valid prediction for snap_scaffold_9-snap.2152-T1
Valid prediction for snap_scaffold_9-snap.2131-T1
Valid prediction for snap_scaffold_9-snap.2128-T1
Valid prediction for Augustus_model.g15207.t1
Valid prediction for HiQ_model.g15190.t1
Valid prediction for HiQ_model.g15187.t1
Valid prediction for GlimmerHMM_glimmerT_22824-T1
Couldn't classify 257417, 257505
Couldn't classify 266015, 266107
Sorry, prediction pasa_asmbl_55257.p1 fails validation.
(TGT)	 GC	257417-257505	GT	GAG
(GAT)	 AG	257845-257921	GT	AAG
(GCT)	 AG	260442-260518	GT	AGG
(CTG)	 AG	261177-261260	GT	AAG
(ACT)	 AG	263328-263498	GT	AGG
(GTC)	 AG	266015-266107	GG	GTG
-recovered pasa_asmbl_55257.p1, internal, 257845, 257921
-recovered pasa_asmbl_55257.p1, internal, 260442, 260518
-recovered pasa_asmbl_55257.p1, internal, 261177, 261260
-recovered pasa_asmbl_55257.p1, internal, 263328, 263498
Valid prediction for snap_scaffold_9-snap.2126-T1
Valid prediction for snap_scaffold_9-snap.2168-T1
Valid prediction for snap_scaffold_9-snap.2166-T1
Valid prediction for snap_scaffold_9-snap.2141-T1
Valid prediction for snap_scaffold_9-snap.2150-T1
Valid prediction for snap_scaffold_9-snap.2121-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3830, rend_intergenic: 1683  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34955, rend_intergenic: 33335  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46998, rend_intergenic: 39757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48457, rend_intergenic: 47444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50239, rend_intergenic: 48490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62999, rend_intergenic: 55067  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121932, rend_intergenic: 120456  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158808, rend_intergenic: 154091  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172950, rend_intergenic: 166617  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 256524, rend_intergenic: 236008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 307137, rend_intergenic: 304623  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 320448
-exon list size: 590


building trellis

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27.9    
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30.7    
30.9    
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33.1    
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33.8    
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38.7    
38.9    
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48.8    
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52.7    
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86.0    
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86.8    
87.0    
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87.5    
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87.8    
88.0    
88.2    
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88.5    
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88.9    
89.0    
89.2    
89.4    
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90.7    
90.9    
91.0    
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91.4    
91.6    
91.7    
91.9    
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92.7    
92.9    
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93.8    
93.9    
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94.6    
94.8    
94.9    
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95.8    
95.9    
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96.3    
96.5    
96.6    
96.8    
97.0    
97.1    
97.3    
97.5    
97.6    
97.8    
98.0    
98.1    
98.3    
98.5    
98.6    
98.8    
99.0    
99.2    
99.3    
99.5    
99.7    
99.8    
-found 43 predictions from path traversal
Error with prediction: snap lend_intergenic: 3830, rend_intergenic: 1683  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34955, rend_intergenic: 33335  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46998, rend_intergenic: 39757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48457, rend_intergenic: 47444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50239, rend_intergenic: 48490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62999, rend_intergenic: 55067  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121932, rend_intergenic: 120456  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158808, rend_intergenic: 154091  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172950, rend_intergenic: 166617  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 256524, rend_intergenic: 236008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 307137, rend_intergenic: 304623  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 34 predictions persist after filtering for low support