-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_9/scaffold_9_10063499-10267652

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g15150.t1
Valid prediction for snap_scaffold_9-snap.2021-T1
Valid prediction for GlimmerHMM_glimmerT_22747-T1
Valid prediction for GlimmerHMM_glimmerT_22749-T1
Valid prediction for snap_scaffold_9-snap.1992-T1
Valid prediction for GlimmerHMM_glimmerT_22742-T1
Valid prediction for GlimmerHMM_glimmerT_22766-T1
Valid prediction for GlimmerHMM_glimmerT_22761-T1
Valid prediction for snap_scaffold_9-snap.2022-T1
Valid prediction for snap_scaffold_9-snap.2014-T1
Valid prediction for snap_scaffold_9-snap.1995-T1
Valid prediction for snap_scaffold_9-snap.1993-T1
Valid prediction for snap_scaffold_9-snap.2003-T1
Valid prediction for Augustus_model.g15144.t1
Valid prediction for HiQ_model.g15153.t1
Valid prediction for GlimmerHMM_glimmerT_22757-T1
Valid prediction for Augustus_model.g15143.t1
Valid prediction for snap_scaffold_9-snap.1997-T1
Valid prediction for Augustus_model.g15151.t1
Valid prediction for snap_scaffold_9-snap.1998-T1
Valid prediction for snap_scaffold_9-snap.2023-T1
Valid prediction for GlimmerHMM_glimmerT_22743-T1
Valid prediction for snap_scaffold_9-snap.2011-T1
Valid prediction for snap_scaffold_9-snap.2005-T1
Valid prediction for GlimmerHMM_glimmerT_22759-T1
Valid prediction for GlimmerHMM_glimmerT_22762-T1
Valid prediction for GlimmerHMM_glimmerT_22763-T1
Valid prediction for GlimmerHMM_glimmerT_22750-T1
Valid prediction for snap_scaffold_9-snap.1991-T1
Valid prediction for snap_scaffold_9-snap.2009-T1
Valid prediction for snap_scaffold_9-snap.1989-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_9-snap.2006-T1
Valid prediction for Augustus_model.g15146.t1
Valid prediction for snap_scaffold_9-snap.2016-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_22765-T1
Valid prediction for GlimmerHMM_glimmerT_22755-T1
Valid prediction for snap_scaffold_9-snap.2000-T1
Valid prediction for snap_scaffold_9-snap.2013-T1
Valid prediction for snap_scaffold_9-snap.2010-T1
Valid prediction for snap_scaffold_9-snap.1996-T1
Valid prediction for snap_scaffold_9-snap.2019-T1
Valid prediction for snap_scaffold_9-snap.2008-T1
Valid prediction for snap_scaffold_9-snap.2004-T1
Valid prediction for GlimmerHMM_glimmerT_22752-T1
Valid prediction for snap_scaffold_9-snap.2001-T1
Valid prediction for GlimmerHMM_glimmerT_22744-T1
Valid prediction for GlimmerHMM_glimmerT_22746-T1
Valid prediction for Augustus_model.g15149.t1
Valid prediction for snap_scaffold_9-snap.2017-T1
Valid prediction for snap_scaffold_9-snap.2020-T1
Valid prediction for snap_scaffold_9-snap.2007-T1
Valid prediction for Augustus_model.g15148.t1
Valid prediction for snap_scaffold_9-snap.1999-T1
Valid prediction for snap_scaffold_9-snap.1994-T1
Valid prediction for snap_scaffold_9-snap.2018-T1
Valid prediction for snap_scaffold_9-snap.1990-T1
Valid prediction for CodingQuarry_transcript_62289-T1
Valid prediction for GlimmerHMM_glimmerT_22758-T1
Valid prediction for Augustus_model.g15152.t1
Valid prediction for GlimmerHMM_glimmerT_22745-T1
Valid prediction for GlimmerHMM_glimmerT_22754-T1
Valid prediction for GlimmerHMM_glimmerT_22764-T1
Valid prediction for GlimmerHMM_glimmerT_22753-T1
Valid prediction for GlimmerHMM_glimmerT_22760-T1
Valid prediction for Augustus_model.g15145.t1
Valid prediction for snap_scaffold_9-snap.2012-T1
Valid prediction for Augustus_model.g15147.t1
Valid prediction for GlimmerHMM_glimmerT_22756-T1
Valid prediction for snap_scaffold_9-snap.2002-T1
Valid prediction for GlimmerHMM_glimmerT_22748-T1
Valid prediction for GlimmerHMM_glimmerT_22751-T1
Valid prediction for snap_scaffold_9-snap.2015-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14084, rend_intergenic: 4912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34886, rend_intergenic: 29286  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72689, rend_intergenic: 59614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99636, rend_intergenic: 97444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112682, rend_intergenic: 105993  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127548, rend_intergenic: 125309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129444, rend_intergenic: 128592  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136109, rend_intergenic: 135182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154520, rend_intergenic: 136829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154637, rend_intergenic: 154627  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 204154
-exon list size: 232


building trellis

0.4    
0.9    
1.3    
1.7    
2.1    
2.6    
3.0    
3.4    
3.8    
4.3    
4.7    
5.1    
5.6    
6.0    
6.4    
6.8    
7.3    
7.7    
8.1    
8.5    
9.0    
9.4    
9.8    
10.3    
10.7    
11.1    
11.5    
12.0    
12.4    
12.8    
13.2    
13.7    
14.1    
14.5    
15.0    
15.4    
15.8    
16.2    
16.7    
17.1    
17.5    
17.9    
18.4    
18.8    
19.2    
19.7    
20.1    
20.5    
20.9    
21.4    
21.8    
22.2    
22.6    
23.1    
23.5    
23.9    
24.4    
24.8    
25.2    
25.6    
26.1    
26.5    
26.9    
27.4    
27.8    
28.2    
28.6    
29.1    
29.5    
29.9    
30.3    
30.8    
31.2    
31.6    
32.1    
32.5    
32.9    
33.3    
33.8    
34.2    
34.6    
35.0    
35.5    
35.9    
36.3    
36.8    
37.2    
37.6    
38.0    
38.5    
38.9    
39.3    
39.7    
40.2    
40.6    
41.0    
41.5    
41.9    
42.3    
42.7    
43.2    
43.6    
44.0    
44.4    
44.9    
45.3    
45.7    
46.2    
46.6    
47.0    
47.4    
47.9    
48.3    
48.7    
49.1    
49.6    
50.0    
50.4    
50.9    
51.3    
51.7    
52.1    
52.6    
53.0    
53.4    
53.8    
54.3    
54.7    
55.1    
55.6    
56.0    
56.4    
56.8    
57.3    
57.7    
58.1    
58.5    
59.0    
59.4    
59.8    
60.3    
60.7    
61.1    
61.5    
62.0    
62.4    
62.8    
63.2    
63.7    
64.1    
64.5    
65.0    
65.4    
65.8    
66.2    
66.7    
67.1    
67.5    
67.9    
68.4    
68.8    
69.2    
69.7    
70.1    
70.5    
70.9    
71.4    
71.8    
72.2    
72.6    
73.1    
73.5    
73.9    
74.4    
74.8    
75.2    
75.6    
76.1    
76.5    
76.9    
77.4    
77.8    
78.2    
78.6    
79.1    
79.5    
79.9    
80.3    
80.8    
81.2    
81.6    
82.1    
82.5    
82.9    
83.3    
83.8    
84.2    
84.6    
85.0    
85.5    
85.9    
86.3    
86.8    
87.2    
87.6    
88.0    
88.5    
88.9    
89.3    
89.7    
90.2    
90.6    
91.0    
91.5    
91.9    
92.3    
92.7    
93.2    
93.6    
94.0    
94.4    
94.9    
95.3    
95.7    
96.2    
96.6    
97.0    
97.4    
97.9    
98.3    
98.7    
99.1    
99.6    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 14084, rend_intergenic: 4912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34886, rend_intergenic: 29286  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72689, rend_intergenic: 59614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99636, rend_intergenic: 97444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112682, rend_intergenic: 105993  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127548, rend_intergenic: 125309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129444, rend_intergenic: 128592  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136109, rend_intergenic: 135182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154520, rend_intergenic: 136829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154637, rend_intergenic: 154627  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 13686
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support