-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_896

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40255.t1
Couldn't classify 3362, 3518
Sorry, prediction GlimmerHMM_glimmerT_60826-T1 fails validation.
(ATG)	 CC	1079-1309	GT	AGG
(ACG)	 AG	2719-2862	GT	ACG
(ACC)	 AG	3362-3518	GT	AGG
-recovered GlimmerHMM_glimmerT_60826-T1, initial, 1079, 1309
-recovered GlimmerHMM_glimmerT_60826-T1, internal, 2719, 2862
-recovered GlimmerHMM_glimmerT_60826-T1, internal, 3362, 3518
Couldn't classify 469, 496
Couldn't classify 3866, 3980
Sorry, prediction snap_scaffold_896-snap.1-T1 fails validation.
(ACT)	 AG	469-496	GT	CGG
(AGA)	 AG	1095-1309	GT	AGG
(ACG)	 AG	2719-2862	GT	ACG
(ACC)	 AG	3362-3518	GT	AGG
(ACC)	 AG	3649-3676	GT	ACG
(TGG)	 AG	3866-3980	GT	AGG
-recovered snap_scaffold_896-snap.1-T1, internal, 469, 496
-recovered snap_scaffold_896-snap.1-T1, internal, 1095, 1309
-recovered snap_scaffold_896-snap.1-T1, internal, 2719, 2862
-recovered snap_scaffold_896-snap.1-T1, internal, 3362, 3518
-recovered snap_scaffold_896-snap.1-T1, internal, 3649, 3676
-recovered snap_scaffold_896-snap.1-T1, internal, 3866, 3980

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2641, 2950
Sorry, prediction snap_scaffold_896-snap.2-T1 fails validation.
(ATG)	 AT	553-701	GT	AGG
(CCT)	 AG	2641-2950	GT	TGG
-recovered snap_scaffold_896-snap.2-T1, initial, 553, 701
-recovered snap_scaffold_896-snap.2-T1, internal, 2641, 2950

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3980, rend_intergenic: 1078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4027
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3980, rend_intergenic: 1078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support