-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_894

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1999, 2028
Couldn't classify 3450, 3824
Sorry, prediction snap_scaffold_894-snap.1-T1 fails validation.
(GCC)	 AG	1999-2028	GT	TGG
(CGC)	 AG	2307-2418	GT	AGG
(AAC)	 AG	2453-2643	GT	ATG
(AAC)	 AG	2868-2949	GT	CAG
(TCG)	 AG	3450-3824	GT	GGG
-recovered snap_scaffold_894-snap.1-T1, internal, 1999, 2028
-recovered snap_scaffold_894-snap.1-T1, internal, 2307, 2418
-recovered snap_scaffold_894-snap.1-T1, internal, 2453, 2643
-recovered snap_scaffold_894-snap.1-T1, internal, 2868, 2949
-recovered snap_scaffold_894-snap.1-T1, internal, 3450, 3824
Couldn't classify 3450, 3629
Sorry, prediction Augustus_model.g40253.t1 fails validation.
(ATG)	 AT	1735-1793	GT	CTG
(GCC)	 AG	1999-2028	GT	TGG
(CGC)	 AG	2307-2418	GT	AGG
(TCG)	 AG	3450-3629	GT	AGG
-recovered Augustus_model.g40253.t1, initial, 1735, 1793
-recovered Augustus_model.g40253.t1, internal, 1999, 2028
-recovered Augustus_model.g40253.t1, internal, 2307, 2418
-recovered Augustus_model.g40253.t1, internal, 3450, 3629
Couldn't classify 3450, 3629
Sorry, prediction GlimmerHMM_glimmerT_60824-T1 fails validation.
(ATG)	 CC	2920-2949	GT	CAG
(TCG)	 AG	3450-3629	GT	AGG
-recovered GlimmerHMM_glimmerT_60824-T1, initial, 2920, 2949
-recovered GlimmerHMM_glimmerT_60824-T1, internal, 3450, 3629
Valid prediction for GlimmerHMM_glimmerT_60823-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60823-T1 2307-2610-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 423, 516
Couldn't classify 1699, 1749
Sorry, prediction snap_scaffold_894-snap.2-T1 fails validation.
(CGT)	 AG	423-516	GT	CCG
(GGA)	 AG	577-619	GT	GGG
(GAG)	 AG	1467-1613	GT	AGG
(GTG)	 AG	1699-1749	GT	AGG
-recovered snap_scaffold_894-snap.2-T1, internal, 423, 516
-recovered snap_scaffold_894-snap.2-T1, internal, 577, 619
-recovered snap_scaffold_894-snap.2-T1, internal, 1467, 1613
-recovered snap_scaffold_894-snap.2-T1, internal, 1699, 1749

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3824, rend_intergenic: 2296  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4044
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3824, rend_intergenic: 2296  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support