-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_892

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 56, 255
Couldn't classify 3255, 3496
Sorry, prediction snap_scaffold_892-snap.2-T1 fails validation.
(CGG)	 AG	56-255	GT	GTG
(AGT)	 AG	718-821	GT	TGG
(GCT)	 AG	1445-1557	GT	GGG
(TTG)	 AG	2367-2591	GT	AGG
(ATG)	 AG	3255-3496	GT	TTG
-recovered snap_scaffold_892-snap.2-T1, initial, 3255, 3496
-recovered snap_scaffold_892-snap.2-T1, internal, 56, 255
-recovered snap_scaffold_892-snap.2-T1, internal, 718, 821
-recovered snap_scaffold_892-snap.2-T1, internal, 1445, 1557
-recovered snap_scaffold_892-snap.2-T1, internal, 2367, 2591
-recovered snap_scaffold_892-snap.2-T1, internal, 3255, 3496
Couldn't classify 56, 255
Sorry, prediction Augustus_model.g40252.t1 fails validation.
(CGG)	 AG	56-255	GT	GTG
(AGT)	 AG	718-821	GT	TGG
(GCT)	 AG	1445-1557	GT	GGG
(TTG)	 AG	2367-2591	GT	AGG
(GTG)	 AG	2680-2754	GT	AGG
(ATG)	 AG	3255-3500	GT	GAG
add_exon() Sorry, Augustus_model.g40252.t1 3255-3500-initial-1 is invalid.
-recovered Augustus_model.g40252.t1, initial, 3255, 3500
-recovered Augustus_model.g40252.t1, terminal, 3255, 3500
-recovered Augustus_model.g40252.t1, internal, 56, 255
-recovered Augustus_model.g40252.t1, internal, 718, 821
-recovered Augustus_model.g40252.t1, internal, 1445, 1557
-recovered Augustus_model.g40252.t1, internal, 2367, 2591
-recovered Augustus_model.g40252.t1, internal, 2680, 2754
-recovered Augustus_model.g40252.t1, internal, 3255, 3500
Valid prediction for GlimmerHMM_glimmerT_60822-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3890, 4002
Sorry, prediction snap_scaffold_892-snap.1-T1 fails validation.
(ATG)	 GG	977-1136	GT	GGG
(GGA)	 AG	1215-1299	GT	GTG
(ATC)	 AG	1446-1627	GT	GGG
(GTG)	 AG	1666-1709	GT	AGG
(CCA)	 AG	3890-4002	GT	AGG
-recovered snap_scaffold_892-snap.1-T1, initial, 977, 1136
-recovered snap_scaffold_892-snap.1-T1, internal, 1215, 1299
-recovered snap_scaffold_892-snap.1-T1, internal, 1446, 1627
-recovered snap_scaffold_892-snap.1-T1, internal, 1666, 1709
-recovered snap_scaffold_892-snap.1-T1, internal, 3890, 4002

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3070, rend_intergenic: 56  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4046
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3070, rend_intergenic: 56  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support