-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_890

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 156, 295
Sorry, prediction snap_scaffold_890-snap.1-T1 fails validation.
(ATC)	 AG	156-295	GT	AGG
(GGC)	 AG	534-668	GT	TGG
(CTT)	 AG	766-815	GT	GGG
(TTC)	 AG	923-1305	GT	AGG
(AGG)	 AG	2223-2355	AG	AAA
-recovered snap_scaffold_890-snap.1-T1, terminal, 2223, 2355
-recovered snap_scaffold_890-snap.1-T1, internal, 156, 295
-recovered snap_scaffold_890-snap.1-T1, internal, 534, 668
-recovered snap_scaffold_890-snap.1-T1, internal, 766, 815
-recovered snap_scaffold_890-snap.1-T1, internal, 923, 1305
Valid prediction for GlimmerHMM_glimmerT_60821-T1
Valid prediction for GlimmerHMM_glimmerT_60820-T1
Couldn't classify 148, 295
Sorry, prediction Augustus_model.g40251.t1 fails validation.
(CTC)	 AG	148-295	GT	AGG
(GGC)	 AG	534-668	GT	TGG
(CTT)	 AG	766-815	GT	GGG
(TTC)	 AG	923-1305	GT	AGG
(TTA)	 AG	2036-2096	AG	AGA
-recovered Augustus_model.g40251.t1, terminal, 2036, 2096
-recovered Augustus_model.g40251.t1, internal, 148, 295
-recovered Augustus_model.g40251.t1, internal, 534, 668
-recovered Augustus_model.g40251.t1, internal, 766, 815
-recovered Augustus_model.g40251.t1, internal, 923, 1305
Valid prediction for snap_scaffold_890-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 33, 160
Couldn't classify 2978, 3108
Sorry, prediction snap_scaffold_890-snap.2-T1 fails validation.
(GTC)	 AG	33-160	GT	CTG
(ACT)	 AG	1734-1816	GT	AGG
(TCT)	 AG	2978-3108	GT	AGG
-recovered snap_scaffold_890-snap.2-T1, internal, 33, 160
-recovered snap_scaffold_890-snap.2-T1, internal, 1734, 1816
-recovered snap_scaffold_890-snap.2-T1, internal, 2978, 3108

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2355, rend_intergenic: 943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 4018, rend_intergenic: 2528  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4050
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2355, rend_intergenic: 943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 4018, rend_intergenic: 2528  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support