-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_888

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3788, 3993
Sorry, prediction snap_scaffold_888-snap.1-T1 fails validation.
(ATG)	 AG	631-988	GT	AGG
(GAG)	 AG	3788-3993	GT	AAG
add_exon() Sorry, snap_scaffold_888-snap.1-T1 631-988-initial-1 is invalid.
-recovered snap_scaffold_888-snap.1-T1, initial, 631, 988
-recovered snap_scaffold_888-snap.1-T1, internal, 631, 988
-recovered snap_scaffold_888-snap.1-T1, internal, 3788, 3993
Valid prediction for GlimmerHMM_glimmerT_60819-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 78, 164
Sorry, prediction snap_scaffold_888-snap.2-T1 fails validation.
(TTC)	 AG	78-164	GT	CTG
(CGG)	 AG	1064-1158	TG	AGT
-recovered snap_scaffold_888-snap.2-T1, terminal, 1064, 1158
-recovered snap_scaffold_888-snap.2-T1, internal, 78, 164

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3993, rend_intergenic: 2901  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4058
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3993, rend_intergenic: 2901  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support