-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_887

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40250.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_887-snap.2-T1
Couldn't classify 687, 775
Sorry, prediction GlimmerHMM_glimmerT_60818-T1 fails validation.
(CTC)	 AG	687-775	GT	GTG
(CAA)	 AG	2354-2496	GT	GGG
(TCC)	 AG	2820-3092	CC	AAC
-recovered GlimmerHMM_glimmerT_60818-T1, terminal, 2820, 3092
-recovered GlimmerHMM_glimmerT_60818-T1, internal, 687, 775
-recovered GlimmerHMM_glimmerT_60818-T1, internal, 2354, 2496
Couldn't classify 2820, 3034
Sorry, prediction snap_scaffold_887-snap.1-T1 fails validation.
(ATG)	 TC	1011-1087	GT	GCG
(GGG)	 AG	2403-2496	GT	GGG
(TCC)	 AG	2820-3034	GT	AGG
-recovered snap_scaffold_887-snap.1-T1, initial, 1011, 1087
-recovered snap_scaffold_887-snap.1-T1, internal, 2403, 2496
-recovered snap_scaffold_887-snap.1-T1, internal, 2820, 3034

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4059
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support