-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_88

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39594.t1
Valid prediction for snap_scaffold_88-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_59754-T1
Valid prediction for GlimmerHMM_glimmerT_59752-T1
Couldn't classify 17615, 17762
Sorry, prediction Augustus_model.g39595.t1 fails validation.
(ATG)	 GA	16124-16180	GT	GGG
(GTC)	 AG	16476-16691	GT	AGG
(GCT)	 AG	17204-17324	GT	AGG
(ATC)	 AG	17615-17762	GT	AGG
-recovered Augustus_model.g39595.t1, initial, 16124, 16180
-recovered Augustus_model.g39595.t1, internal, 16476, 16691
-recovered Augustus_model.g39595.t1, internal, 17204, 17324
-recovered Augustus_model.g39595.t1, internal, 17615, 17762
Couldn't classify 17615, 17762
Sorry, prediction snap_scaffold_88-snap.4-T1 fails validation.
(ATG)	 TA	9500-9507	GT	TCG
(AGG)	 AG	11699-11848	GT	AGG
(ACT)	 AG	12213-12536	GT	CCG
(GGG)	 AG	12620-12683	GT	AAG
(GTC)	 AG	16476-16691	GT	AGG
(GCT)	 AG	17204-17324	GT	AGG
(ATC)	 AG	17615-17762	GT	AGG
-recovered snap_scaffold_88-snap.4-T1, initial, 9500, 9507
-recovered snap_scaffold_88-snap.4-T1, internal, 11699, 11848
-recovered snap_scaffold_88-snap.4-T1, internal, 12213, 12536
-recovered snap_scaffold_88-snap.4-T1, internal, 12620, 12683
-recovered snap_scaffold_88-snap.4-T1, internal, 16476, 16691
-recovered snap_scaffold_88-snap.4-T1, internal, 17204, 17324
-recovered snap_scaffold_88-snap.4-T1, internal, 17615, 17762
Valid prediction for snap_scaffold_88-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_59753-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 17328, 17479
Sorry, prediction snap_scaffold_88-snap.1-T1 fails validation.
(ATG)	 AG	10696-10732	GT	AGG
(GGA)	 AG	14404-14511	GT	GGG
(GAG)	 AG	14966-15189	GT	AGG
(GGA)	 AG	17042-17048	GT	AAG
(ATG)	 AG	17328-17479	GT	TCG
-recovered snap_scaffold_88-snap.1-T1, initial, 10696, 10732
add_exon() Sorry, snap_scaffold_88-snap.1-T1 17328-17479-initial-1 is invalid.
-recovered snap_scaffold_88-snap.1-T1, initial, 17328, 17479
-recovered snap_scaffold_88-snap.1-T1, terminal, 17042, 17048
-recovered snap_scaffold_88-snap.1-T1, internal, 10696, 10732
-recovered snap_scaffold_88-snap.1-T1, internal, 14404, 14511
-recovered snap_scaffold_88-snap.1-T1, internal, 14966, 15189
-recovered snap_scaffold_88-snap.1-T1, internal, 17042, 17048
-recovered snap_scaffold_88-snap.1-T1, internal, 17328, 17479
Couldn't classify 17328, 17479
Sorry, prediction Augustus_model.g39593.t1 fails validation.
(ATG)	 CG	16048-16123	GT	GGG
(ATG)	 AG	17328-17479	GT	TCG
-recovered Augustus_model.g39593.t1, initial, 16048, 16123
add_exon() Sorry, Augustus_model.g39593.t1 17328-17479-initial-1 is invalid.
-recovered Augustus_model.g39593.t1, initial, 17328, 17479
-recovered Augustus_model.g39593.t1, internal, 17328, 17479

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7246, rend_intergenic: 2167  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 17941
-exon list size: 38


building trellis

2.5    
5.0    
7.5    
10.0    
12.5    
15.0    
17.5    
20.0    
22.5    
25.0    
27.5    
30.0    
32.5    
35.0    
37.5    
40.0    
42.5    
45.0    
47.5    
50.0    
52.5    
55.0    
57.5    
60.0    
62.5    
65.0    
67.5    
70.0    
72.5    
75.0    
77.5    
80.0    
82.5    
85.0    
87.5    
90.0    
92.5    
95.0    
97.5    
-found 6 predictions from path traversal
Error with prediction: snap lend_intergenic: 7246, rend_intergenic: 2167  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support