-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_879

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 76, 165
Sorry, prediction Augustus_model.g40247.t1 fails validation.
(CCA)	 AG	76-165	GT	CAG
(CGC)	 AG	493-776	CA	AAC
-recovered Augustus_model.g40247.t1, terminal, 493, 776
-recovered Augustus_model.g40247.t1, internal, 76, 165
Couldn't classify 76, 165
Sorry, prediction snap_scaffold_879-snap.1-T1 fails validation.
(CCA)	 AG	76-165	GT	CAG
(CGC)	 AG	493-764	GT	CCG
(TTG)	 AG	820-889	GT	AGG
(ACG)	 AG	1801-1925	AG	GAA
-recovered snap_scaffold_879-snap.1-T1, terminal, 1801, 1925
-recovered snap_scaffold_879-snap.1-T1, internal, 76, 165
-recovered snap_scaffold_879-snap.1-T1, internal, 493, 764
-recovered snap_scaffold_879-snap.1-T1, internal, 820, 889
Valid prediction for GlimmerHMM_glimmerT_60812-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60812-T1 493-776-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40248.t1
Couldn't classify 2003, 2345
Sorry, prediction snap_scaffold_879-snap.2-T1 fails validation.
(GAG)	 AG	2003-2345	GT	AGG
(CAG)	 AG	2826-3180	GT	GCG
(AAC)	 AG	3399-3473	CC	AGC
-recovered snap_scaffold_879-snap.2-T1, terminal, 3399, 3473
-recovered snap_scaffold_879-snap.2-T1, internal, 2003, 2345
-recovered snap_scaffold_879-snap.2-T1, internal, 2826, 3180
Valid prediction for GlimmerHMM_glimmerT_60813-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60813-T1 2003-2349-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1925, rend_intergenic: 631  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4103
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 1925, rend_intergenic: 631  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support