-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_878

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3639, 4100
Sorry, prediction pasa_asmbl_53731.p1 fails validation.
(ATG)	 GC	3639-4100	AT	AGA
Couldn't classify 4023, 4084
Sorry, prediction snap_scaffold_878-snap.1-T1 fails validation.
(ATG)	 CC	1807-1811	GT	AGG
(AGA)	 AG	3611-3998	GT	TGG
(ACT)	 AG	4023-4084	GT	ACG
-recovered snap_scaffold_878-snap.1-T1, initial, 1807, 1811
-recovered snap_scaffold_878-snap.1-T1, internal, 3611, 3998
-recovered snap_scaffold_878-snap.1-T1, internal, 4023, 4084
Valid prediction for GlimmerHMM_glimmerT_60811-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4104
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support