-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_877

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2677, 2969
Sorry, prediction pasa_asmbl_53730.p1 fails validation.
(ATG)	 AA	2357-2567	GT	TGG
(AGT)	 AG	2677-2969	GC	AAG
-recovered pasa_asmbl_53730.p1, initial, 2357, 2567
-recovered pasa_asmbl_53730.p1, internal, 2677, 2969
Valid prediction for Augustus_model.g40245.t1
Couldn't classify 1074, 1415
Sorry, prediction GlimmerHMM_glimmerT_60810-T1 fails validation.
(CAC)	 AG	1074-1415	GT	AGG
(AGT)	 AG	2229-2567	GT	TGG
(AGT)	 AG	2677-2996	TG	GAT
-recovered GlimmerHMM_glimmerT_60810-T1, terminal, 2677, 2996
-recovered GlimmerHMM_glimmerT_60810-T1, internal, 1074, 1415
-recovered GlimmerHMM_glimmerT_60810-T1, internal, 2229, 2567

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4109
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support