-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_871

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3849, 3981
Sorry, prediction GlimmerHMM_glimmerT_60807-T1 fails validation.
(ATG)	 TC	1085-1120	GT	AAG
(GGC)	 AG	3849-3981	GT	GGG
-recovered GlimmerHMM_glimmerT_60807-T1, initial, 1085, 1120
-recovered GlimmerHMM_glimmerT_60807-T1, internal, 3849, 3981
Couldn't classify 3849, 3981
Sorry, prediction Augustus_model.g40242.t1 fails validation.
(ATG)	 AG	749-781	GT	AGG
(GTT)	 AG	1073-1120	GT	AAG
(GGC)	 AG	3849-3981	GT	GGG
-recovered Augustus_model.g40242.t1, initial, 749, 781
-recovered Augustus_model.g40242.t1, internal, 749, 781
-recovered Augustus_model.g40242.t1, internal, 1073, 1120
-recovered Augustus_model.g40242.t1, internal, 3849, 3981
Couldn't classify 3849, 3981
Sorry, prediction snap_scaffold_871-snap.1-T1 fails validation.
(ATG)	 CA	228-236	GT	GGG
(GTT)	 AG	1073-1120	GT	AAG
(GGC)	 AG	3849-3981	GT	GGG
-recovered snap_scaffold_871-snap.1-T1, initial, 228, 236
-recovered snap_scaffold_871-snap.1-T1, internal, 1073, 1120
-recovered snap_scaffold_871-snap.1-T1, internal, 3849, 3981

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 151, 223
Couldn't classify 3731, 3846
Sorry, prediction snap_scaffold_871-snap.2-T1 fails validation.
(CAT)	 AG	151-223	GT	GAG
(GCC)	 AG	275-368	GT	AGG
(GGG)	 AG	3407-3424	GT	ATG
(TGA)	 AG	3731-3846	GT	CGG
-recovered snap_scaffold_871-snap.2-T1, internal, 151, 223
-recovered snap_scaffold_871-snap.2-T1, internal, 275, 368
-recovered snap_scaffold_871-snap.2-T1, internal, 3407, 3424
-recovered snap_scaffold_871-snap.2-T1, internal, 3731, 3846

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3981, rend_intergenic: 280  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4125
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3981, rend_intergenic: 280  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support