-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_87

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_59747-T1
Valid prediction for snap_scaffold_87-snap.8-T1
Valid prediction for snap_scaffold_87-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_59748-T1
Valid prediction for snap_scaffold_87-snap.9-T1
Valid prediction for GlimmerHMM_glimmerT_59749-T1
Valid prediction for Augustus_model.g39586.t1
Valid prediction for snap_scaffold_87-snap.7-T1
Valid prediction for Augustus_model.g39589.t1
Valid prediction for GlimmerHMM_glimmerT_59745-T1
Valid prediction for snap_scaffold_87-snap.6-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59751-T1
Couldn't classify 17695, 17787
Sorry, prediction snap_scaffold_87-snap.1-T1 fails validation.
(ATG)	 AA	17461-17602	GT	GGG
(TAC)	 AG	17695-17787	GT	AGG
-recovered snap_scaffold_87-snap.1-T1, initial, 17461, 17602
-recovered snap_scaffold_87-snap.1-T1, internal, 17695, 17787
Valid prediction for GlimmerHMM_glimmerT_59750-T1
Valid prediction for Augustus_model.g39587.t1
Valid prediction for Augustus_model.g39592.t1
Valid prediction for snap_scaffold_87-snap.2-T1
Valid prediction for Augustus_model.g39588.t1
Valid prediction for GlimmerHMM_glimmerT_59746-T1
Valid prediction for GlimmerHMM_glimmerT_59744-T1
Couldn't classify 17695, 17787
Sorry, prediction Augustus_model.g39585.t1 fails validation.
(ATG)	 AA	17461-17602	GT	GGG
(TAC)	 AG	17695-17787	GT	AGG
-recovered Augustus_model.g39585.t1, initial, 17461, 17602
-recovered Augustus_model.g39585.t1, internal, 17695, 17787
Valid prediction for Augustus_model.g39591.t1
Valid prediction for snap_scaffold_87-snap.4-T1
Valid prediction for Augustus_model.g39590.t1
Valid prediction for snap_scaffold_87-snap.5-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 17959
-exon list size: 55


building trellis

1.8    
3.5    
5.3    
7.0    
8.8    
10.5    
12.3    
14.0    
15.8    
17.5    
19.3    
21.1    
22.8    
24.6    
26.3    
28.1    
29.8    
31.6    
33.3    
35.1    
36.8    
38.6    
40.4    
42.1    
43.9    
45.6    
47.4    
49.1    
50.9    
52.6    
54.4    
56.1    
57.9    
59.6    
61.4    
63.2    
64.9    
66.7    
68.4    
70.2    
71.9    
73.7    
75.4    
77.2    
78.9    
80.7    
82.5    
84.2    
86.0    
87.7    
89.5    
91.2    
93.0    
94.7    
96.5    
98.2    
-found 11 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support