-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_869

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_869-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_60805-T1
Couldn't classify 107, 200
Sorry, prediction snap_scaffold_869-snap.1-T1 fails validation.
(AAC)	 AG	107-200	GT	CGG
(TCT)	 AG	280-388	TT	AGT
-recovered snap_scaffold_869-snap.1-T1, terminal, 280, 388
-recovered snap_scaffold_869-snap.1-T1, internal, 107, 200
Valid prediction for Augustus_model.g40241.t1
Couldn't classify 3257, 3427
Sorry, prediction GlimmerHMM_glimmerT_60806-T1 fails validation.
(ATG)	 CC	1319-1322	GT	GGG
(ATA)	 AG	3257-3427	GT	GTG
-recovered GlimmerHMM_glimmerT_60806-T1, initial, 1319, 1322
-recovered GlimmerHMM_glimmerT_60806-T1, internal, 3257, 3427

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4148
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support