-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_864

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 560, 608
Couldn't classify 3518, 3642
Sorry, prediction snap_scaffold_864-snap.1-T1 fails validation.
(GTG)	 AG	560-608	GT	CGG
(TGA)	 AG	1940-1995	GT	AGG
(GGT)	 AG	3163-3250	GT	CAG
(ACA)	 AG	3518-3642	GT	AGG
-recovered snap_scaffold_864-snap.1-T1, internal, 560, 608
-recovered snap_scaffold_864-snap.1-T1, internal, 1940, 1995
-recovered snap_scaffold_864-snap.1-T1, internal, 3163, 3250
-recovered snap_scaffold_864-snap.1-T1, internal, 3518, 3642
Couldn't classify 560, 608
Couldn't classify 3518, 3642
Sorry, prediction Augustus_model.g40240.t1 fails validation.
(GTG)	 AG	560-608	GT	CGG
(TGA)	 AG	1940-1995	GT	AGG
(GGT)	 AG	3163-3250	GT	CAG
(ACA)	 AG	3518-3642	GT	AGG
-recovered Augustus_model.g40240.t1, internal, 560, 608
-recovered Augustus_model.g40240.t1, internal, 1940, 1995
-recovered Augustus_model.g40240.t1, internal, 3163, 3250
-recovered Augustus_model.g40240.t1, internal, 3518, 3642

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4176
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support