-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_863

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2952, 3358
Sorry, prediction snap_scaffold_863-snap.1-T1 fails validation.
(ATG)	 CA	126-146	GT	GGG
(GTT)	 AG	683-812	GT	TGG
(GAT)	 AG	2952-3358	GT	AGG
-recovered snap_scaffold_863-snap.1-T1, initial, 126, 146
-recovered snap_scaffold_863-snap.1-T1, internal, 683, 812
-recovered snap_scaffold_863-snap.1-T1, internal, 2952, 3358

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 978, 1091
Couldn't classify 3342, 3542
Sorry, prediction pasa_asmbl_53711.p1 fails validation.
(CTG)	 GT	978-1091	GT	AGG
(GGC)	 AG	3342-3542	GG	GAG
Couldn't classify 977, 1091
Sorry, prediction GlimmerHMM_glimmerT_60801-T1 fails validation.
(TCT)	 AG	977-1091	GT	AGG
(GAG)	 AG	2922-3035	AC	AGA
-recovered GlimmerHMM_glimmerT_60801-T1, terminal, 2922, 3035
-recovered GlimmerHMM_glimmerT_60801-T1, internal, 977, 1091
Couldn't classify 3342, 3547
Sorry, prediction Augustus_model.g40239.t1 fails validation.
(ATG)	 AG	352-365	GT	AGG
(TCT)	 AG	977-1091	GT	AGG
(GGC)	 AG	3342-3547	GT	GGG
-recovered Augustus_model.g40239.t1, initial, 352, 365
-recovered Augustus_model.g40239.t1, internal, 352, 365
-recovered Augustus_model.g40239.t1, internal, 977, 1091
-recovered Augustus_model.g40239.t1, internal, 3342, 3547
Couldn't classify 977, 1091
Couldn't classify 3342, 3543
Sorry, prediction snap_scaffold_863-snap.2-T1 fails validation.
(TCT)	 AG	977-1091	GT	AGG
(GGC)	 AG	3342-3543	GT	AGG
-recovered snap_scaffold_863-snap.2-T1, internal, 977, 1091
-recovered snap_scaffold_863-snap.2-T1, internal, 3342, 3543
Valid prediction for GlimmerHMM_glimmerT_60800-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3358, rend_intergenic: 634  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4176
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3358, rend_intergenic: 634  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support