-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_862

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3333, 3479
Sorry, prediction GlimmerHMM_glimmerT_60799-T1 fails validation.
(ATG)	 CC	516-1016	GT	AGG
(GTT)	 AG	3333-3479	GT	TGG
-recovered GlimmerHMM_glimmerT_60799-T1, initial, 516, 1016
-recovered GlimmerHMM_glimmerT_60799-T1, internal, 3333, 3479
Couldn't classify 3359, 3479
Sorry, prediction snap_scaffold_862-snap.1-T1 fails validation.
(ATG)	 CC	516-1068	GT	AAG
(CTC)	 AG	2724-2814	GT	CGG
(GAC)	 AG	2819-2938	GT	CCG
(CTT)	 AG	3359-3479	GT	TGG
-recovered snap_scaffold_862-snap.1-T1, initial, 516, 1068
-recovered snap_scaffold_862-snap.1-T1, internal, 2724, 2814
-recovered snap_scaffold_862-snap.1-T1, internal, 2819, 2938
-recovered snap_scaffold_862-snap.1-T1, internal, 3359, 3479
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g40238.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4179
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support