-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_860

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2110, 3265
Couldn't classify 3407, 3609
Sorry, prediction snap_scaffold_860-snap.1-T1 fails validation.
(AGG)	 AG	2110-3265	GT	AAG
(ATA)	 AG	3407-3609	GT	AAG
add_exon() Sorry, snap_scaffold_860-snap.1-T1 2110-3265-terminal-3 is invalid.
-recovered snap_scaffold_860-snap.1-T1, terminal, 2110, 3265
-recovered snap_scaffold_860-snap.1-T1, internal, 2110, 3265
-recovered snap_scaffold_860-snap.1-T1, internal, 3407, 3609
Couldn't classify 3407, 3609
Sorry, prediction GlimmerHMM_glimmerT_60796-T1 fails validation.
(ATG)	 GC	2140-3256	GT	TGG
(ATA)	 AG	3407-3609	GT	AAG
-recovered GlimmerHMM_glimmerT_60796-T1, initial, 2140, 3256
-recovered GlimmerHMM_glimmerT_60796-T1, internal, 3407, 3609
Valid prediction for Augustus_model.g40237.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4188
-exon list size: 8


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support