-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_86

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 10724, 10791
Sorry, prediction pasa_asmbl_53710.p1 fails validation.
(TCG)	 GC	10724-10791	GT	ATG
(TTT)	 AG	11174-11561	GT	ACG
(GTC)	 AG	11860-12136	GT	GGG
(GTT)	 AG	12281-12744	GA	GAG
-recovered pasa_asmbl_53710.p1, terminal, 12281, 12744
-recovered pasa_asmbl_53710.p1, internal, 11174, 11561
-recovered pasa_asmbl_53710.p1, internal, 11860, 12136
Couldn't classify 17320, 17485
Sorry, prediction GlimmerHMM_glimmerT_59743-T1 fails validation.
(ATG)	 GA	13415-13586	GT	TGG
(AAC)	 AG	15116-15221	GT	CTG
(GGG)	 AG	15935-16124	GT	CTG
(GTT)	 AG	17320-17485	GT	AGG
-recovered GlimmerHMM_glimmerT_59743-T1, initial, 13415, 13586
-recovered GlimmerHMM_glimmerT_59743-T1, internal, 15116, 15221
-recovered GlimmerHMM_glimmerT_59743-T1, internal, 15935, 16124
-recovered GlimmerHMM_glimmerT_59743-T1, internal, 17320, 17485
Couldn't classify 18173, 18190
Sorry, prediction snap_scaffold_86-snap.3-T1 fails validation.
(ATG)	 GA	15258-15267	GT	ATG
(GGC)	 AG	15339-15390	GT	AGG
(GGG)	 AG	15935-16086	GT	GGG
(ACA)	 AG	16497-16519	GT	AGG
(GTT)	 AG	17320-17485	GT	AGG
(TGC)	 AG	17600-17652	GT	AGG
(ATG)	 AG	18173-18190	GT	TGG
-recovered snap_scaffold_86-snap.3-T1, initial, 15258, 15267
-recovered snap_scaffold_86-snap.3-T1, initial, 18173, 18190
-recovered snap_scaffold_86-snap.3-T1, internal, 15339, 15390
-recovered snap_scaffold_86-snap.3-T1, internal, 15935, 16086
-recovered snap_scaffold_86-snap.3-T1, internal, 16497, 16519
-recovered snap_scaffold_86-snap.3-T1, internal, 17320, 17485
-recovered snap_scaffold_86-snap.3-T1, internal, 17600, 17652
-recovered snap_scaffold_86-snap.3-T1, internal, 18173, 18190
Valid prediction for snap_scaffold_86-snap.2-T1
Valid prediction for Augustus_model.g39584.t1
Valid prediction for GlimmerHMM_glimmerT_59742-T1
Valid prediction for HiQ_model.g39583.t1
Valid prediction for GlimmerHMM_glimmerT_59740-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59741-T1
Valid prediction for Augustus_model.g39582.t1
Valid prediction for snap_scaffold_86-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 18250
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support