-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_858

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2832, 3038
Sorry, prediction snap_scaffold_858-snap.1-T1 fails validation.
(ATG)	 TC	914-950	GT	AAG
(GAG)	 AG	1296-1445	GT	AGG
(CCC)	 AG	2832-3038	GT	AGG
-recovered snap_scaffold_858-snap.1-T1, initial, 914, 950
-recovered snap_scaffold_858-snap.1-T1, internal, 1296, 1445
-recovered snap_scaffold_858-snap.1-T1, internal, 2832, 3038
Valid prediction for GlimmerHMM_glimmerT_60795-T1
Couldn't classify 1296, 1445
Sorry, prediction Augustus_model.g40236.t1 fails validation.
(GAG)	 AG	1296-1445	GT	AGG
(CCC)	 AG	2832-3055	GG	AGG
-recovered Augustus_model.g40236.t1, terminal, 2832, 3055
-recovered Augustus_model.g40236.t1, internal, 1296, 1445
Couldn't classify 1361, 1445
Sorry, prediction pasa_asmbl_53708.p1 fails validation.
(GAC)	 TG	1361-1445	GT	AGG
(CCC)	 AG	2832-3055	GG	AGG
-recovered pasa_asmbl_53708.p1, terminal, 2832, 3055

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4189
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support