-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_857

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 33, 197
Couldn't classify 4037, 4105
Sorry, prediction snap_scaffold_857-snap.1-T1 fails validation.
(ACC)	 AG	33-197	GT	GAG
(TGT)	 AG	1003-1224	GT	AGG
(CGT)	 AG	4037-4105	GT	AGG
-recovered snap_scaffold_857-snap.1-T1, internal, 33, 197
-recovered snap_scaffold_857-snap.1-T1, internal, 1003, 1224
-recovered snap_scaffold_857-snap.1-T1, internal, 4037, 4105
Couldn't classify 1, 155
Sorry, prediction Augustus_model.g40235.t1 fails validation.
(TGA)	 GG	1-155	GT	ACG
(CCG)	 AG	448-570	GT	AGG
(TGT)	 AG	1003-1224	GT	AGG
(GTT)	 AG	1804-1833	GG	GAG
-recovered Augustus_model.g40235.t1, terminal, 1804, 1833
-recovered Augustus_model.g40235.t1, internal, 448, 570
-recovered Augustus_model.g40235.t1, internal, 1003, 1224
Couldn't classify 33, 197
Sorry, prediction GlimmerHMM_glimmerT_60794-T1 fails validation.
(ACC)	 AG	33-197	GT	GAG
(TGT)	 AG	1003-1224	GT	AGG
(CAG)	 AG	3146-3190	TT	AAT
-recovered GlimmerHMM_glimmerT_60794-T1, terminal, 3146, 3190
-recovered GlimmerHMM_glimmerT_60794-T1, internal, 33, 197
-recovered GlimmerHMM_glimmerT_60794-T1, internal, 1003, 1224

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4190
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support