-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_854

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 115, 347
Sorry, prediction GlimmerHMM_glimmerT_60792-T1 fails validation.
(GGT)	 AG	115-347	GT	GGG
(ATG)	 AG	3630-3818	CC	GAC
-recovered GlimmerHMM_glimmerT_60792-T1, terminal, 3630, 3818
-recovered GlimmerHMM_glimmerT_60792-T1, internal, 115, 347
Valid prediction for snap_scaffold_854-snap.2-T1
add_exon() Sorry, snap_scaffold_854-snap.2-T1 56-389-terminal-1 is invalid.
Valid prediction for snap_scaffold_854-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4210
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support