-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_848

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 367, 540
Couldn't classify 3429, 3539
Sorry, prediction snap_scaffold_848-snap.1-T1 fails validation.
(AGG)	 AG	367-540	GT	GTG
(CAG)	 AG	2621-2695	GT	CTG
(CGA)	 AG	3175-3263	GT	ATG
(GGC)	 AG	3429-3539	GT	AGG
-recovered snap_scaffold_848-snap.1-T1, internal, 367, 540
-recovered snap_scaffold_848-snap.1-T1, internal, 2621, 2695
-recovered snap_scaffold_848-snap.1-T1, internal, 3175, 3263
-recovered snap_scaffold_848-snap.1-T1, internal, 3429, 3539
Valid prediction for GlimmerHMM_glimmerT_60790-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4227
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support