-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_847

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2436, 2491
Couldn't classify 4086, 4159
Sorry, prediction pasa_asmbl_53703.p1 fails validation.
(GCA)	 AG	2436-2491	GT	AGG
(TTC)	 AG	2725-2898	GT	GAG
(ACC)	 AG	3288-3370	GT	GGG
(GGA)	 AG	4086-4159	GT	AGG
-recovered pasa_asmbl_53703.p1, terminal, 2436, 2491
-recovered pasa_asmbl_53703.p1, internal, 2436, 2491
-recovered pasa_asmbl_53703.p1, internal, 2725, 2898
-recovered pasa_asmbl_53703.p1, internal, 3288, 3370
-recovered pasa_asmbl_53703.p1, internal, 4086, 4159
Valid prediction for Augustus_model.g40234.t1
Couldn't classify 44, 241
Couldn't classify 4086, 4159
Sorry, prediction snap_scaffold_847-snap.1-T1 fails validation.
(CTC)	 AG	44-241	GT	TGG
(CCA)	 AG	686-729	GT	CGG
(GGA)	 AG	2203-2373	GT	GGG
(TGG)	 AG	2382-2491	GT	AGG
(TTC)	 AG	2725-2898	GT	GAG
(ACC)	 AG	3288-3370	GT	GGG
(GGA)	 AG	4086-4159	GT	AGG
add_exon() Sorry, snap_scaffold_847-snap.1-T1 2382-2491-terminal-2 is invalid.
-recovered snap_scaffold_847-snap.1-T1, terminal, 2382, 2491
-recovered snap_scaffold_847-snap.1-T1, internal, 44, 241
-recovered snap_scaffold_847-snap.1-T1, internal, 686, 729
-recovered snap_scaffold_847-snap.1-T1, internal, 2203, 2373
-recovered snap_scaffold_847-snap.1-T1, internal, 2382, 2491
-recovered snap_scaffold_847-snap.1-T1, internal, 2725, 2898
-recovered snap_scaffold_847-snap.1-T1, internal, 3288, 3370
-recovered snap_scaffold_847-snap.1-T1, internal, 4086, 4159
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_60789-T1
Valid prediction for GlimmerHMM_glimmerT_60788-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1510, 1616
Sorry, prediction snap_scaffold_847-snap.2-T1 fails validation.
(AAC)	 AG	1510-1616	GT	CTG
(GGG)	 AG	2009-2178	GT	GGG
(ATT)	 AG	3489-3579	AC	AGA
-recovered snap_scaffold_847-snap.2-T1, terminal, 3489, 3579
-recovered snap_scaffold_847-snap.2-T1, internal, 1510, 1616
-recovered snap_scaffold_847-snap.2-T1, internal, 2009, 2178

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4159, rend_intergenic: 657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4235
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4159, rend_intergenic: 657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support