-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_846

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3343, 3605
Sorry, prediction GlimmerHMM_glimmerT_60787-T1 fails validation.
(ATG)	 GG	1158-1493	GT	GGG
(GTC)	 AG	3343-3605	GT	GGG
-recovered GlimmerHMM_glimmerT_60787-T1, initial, 1158, 1493
-recovered GlimmerHMM_glimmerT_60787-T1, internal, 3343, 3605
Couldn't classify 1071, 1626
Sorry, prediction snap_scaffold_846-snap.1-T1 fails validation.
(GCT)	 AG	1071-1626	GT	GGG
(CCC)	 AG	3273-3314	GT	AAG
add_exon() Sorry, snap_scaffold_846-snap.1-T1 3273-3314-terminal-1 is invalid.
-recovered snap_scaffold_846-snap.1-T1, terminal, 3273, 3314
-recovered snap_scaffold_846-snap.1-T1, internal, 1071, 1626
-recovered snap_scaffold_846-snap.1-T1, internal, 3273, 3314

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4242
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support