-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_842

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1099, 1240
Sorry, prediction GlimmerHMM_glimmerT_60784-T1 fails validation.
(GTT)	 AG	1099-1240	GT	AAG
(AGA)	 AG	2428-2540	GT	CGG
(GAG)	 AG	2633-2710	GT	AGG
(GCA)	 AG	3139-3251	CC	AAC
-recovered GlimmerHMM_glimmerT_60784-T1, terminal, 3139, 3251
-recovered GlimmerHMM_glimmerT_60784-T1, internal, 1099, 1240
-recovered GlimmerHMM_glimmerT_60784-T1, internal, 2428, 2540
-recovered GlimmerHMM_glimmerT_60784-T1, internal, 2633, 2710
Couldn't classify 3666, 3838
Sorry, prediction Augustus_model.g40232.t1 fails validation.
(ATG)	 TG	231-300	GT	GGG
(GTT)	 AG	1099-1240	GT	AAG
(AGA)	 AG	2428-2540	GT	CGG
(GAG)	 AG	2633-2710	GT	AGG
(GCA)	 AG	3139-3247	GT	AGG
(CGT)	 AG	3666-3838	GT	AGG
-recovered Augustus_model.g40232.t1, initial, 231, 300
-recovered Augustus_model.g40232.t1, internal, 1099, 1240
-recovered Augustus_model.g40232.t1, internal, 2428, 2540
-recovered Augustus_model.g40232.t1, internal, 2633, 2710
-recovered Augustus_model.g40232.t1, internal, 3139, 3247
-recovered Augustus_model.g40232.t1, internal, 3666, 3838
Couldn't classify 3666, 3838
Sorry, prediction snap_scaffold_842-snap.1-T1 fails validation.
(ATG)	 TG	231-300	GT	GGG
(GTT)	 AG	1099-1240	GT	AAG
(AGA)	 AG	2428-2540	GT	CGG
(GAG)	 AG	2633-2710	GT	AGG
(GCA)	 AG	3139-3247	GT	AGG
(CGT)	 AG	3666-3838	GT	AGG
-recovered snap_scaffold_842-snap.1-T1, initial, 231, 300
-recovered snap_scaffold_842-snap.1-T1, internal, 1099, 1240
-recovered snap_scaffold_842-snap.1-T1, internal, 2428, 2540
-recovered snap_scaffold_842-snap.1-T1, internal, 2633, 2710
-recovered snap_scaffold_842-snap.1-T1, internal, 3139, 3247
-recovered snap_scaffold_842-snap.1-T1, internal, 3666, 3838
Valid prediction for GlimmerHMM_glimmerT_60783-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4246
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support