-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_841

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 465, 513
Couldn't classify 2548, 2930
Sorry, prediction snap_scaffold_841-snap.1-T1 fails validation.
(ACA)	 AG	465-513	GT	ATG
(GTG)	 AG	1108-1164	GT	AGG
(AAT)	 AG	2408-2465	GT	CGG
(ATA)	 AG	2548-2930	GT	CTG
-recovered snap_scaffold_841-snap.1-T1, internal, 465, 513
-recovered snap_scaffold_841-snap.1-T1, internal, 1108, 1164
-recovered snap_scaffold_841-snap.1-T1, internal, 2408, 2465
-recovered snap_scaffold_841-snap.1-T1, internal, 2548, 2930
Couldn't classify 465, 513
Sorry, prediction Augustus_model.g40231.t1 fails validation.
(ACA)	 AG	465-513	GT	ATG
(GTG)	 AG	1108-1164	GT	AGG
(AGA)	 AG	2595-2960	GA	AAG
-recovered Augustus_model.g40231.t1, terminal, 2595, 2960
-recovered Augustus_model.g40231.t1, internal, 465, 513
-recovered Augustus_model.g40231.t1, internal, 1108, 1164
Valid prediction for GlimmerHMM_glimmerT_60782-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4248
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support