-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_84

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 18205, 18444
Sorry, prediction snap_scaffold_84-snap.3-T1 fails validation.
(ATG)	 TG	3063-3081	GT	TGG
(GTA)	 AG	3168-3325	GT	GGG
(GAC)	 AG	4704-5133	GT	GGG
(CTG)	 AG	10210-10316	GT	TAG
(GCA)	 AG	10564-10692	GT	TTG
(CAG)	 AG	18205-18444	GT	AGG
-recovered snap_scaffold_84-snap.3-T1, initial, 3063, 3081
-recovered snap_scaffold_84-snap.3-T1, internal, 3168, 3325
-recovered snap_scaffold_84-snap.3-T1, internal, 4704, 5133
-recovered snap_scaffold_84-snap.3-T1, internal, 10210, 10316
-recovered snap_scaffold_84-snap.3-T1, internal, 10564, 10692
-recovered snap_scaffold_84-snap.3-T1, internal, 18205, 18444
Couldn't classify 131, 152
Sorry, prediction snap_scaffold_84-snap.1-T1 fails validation.
(CGT)	 AG	131-152	GT	ATG
(AGG)	 AG	1792-2091	AA	GAA
-recovered snap_scaffold_84-snap.1-T1, terminal, 1792, 2091
-recovered snap_scaffold_84-snap.1-T1, internal, 131, 152

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39578.t1
Valid prediction for Augustus_model.g39577.t1
Couldn't classify 224, 286
Sorry, prediction GlimmerHMM_glimmerT_59736-T1 fails validation.
(CTT)	 AG	224-286	GT	AGG
(ACC)	 AG	365-497	GT	CGG
(GTC)	 AG	9223-9329	GT	AGG
(GTC)	 AG	16733-16963	TA	AGT
-recovered GlimmerHMM_glimmerT_59736-T1, terminal, 16733, 16963
-recovered GlimmerHMM_glimmerT_59736-T1, internal, 224, 286
-recovered GlimmerHMM_glimmerT_59736-T1, internal, 365, 497
-recovered GlimmerHMM_glimmerT_59736-T1, internal, 9223, 9329
Valid prediction for snap_scaffold_84-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2091, rend_intergenic: 1728  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18533, rend_intergenic: 3063  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 18685
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2091, rend_intergenic: 1728  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18533, rend_intergenic: 3063  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support