-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_839

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60781-T1
Couldn't classify 1913, 2164
Sorry, prediction snap_scaffold_839-snap.1-T1 fails validation.
(GGC)	 AG	1913-2164	GT	AGG
(CGT)	 AG	3389-3532	GT	AGG
(TAT)	 AG	4059-4164	GG	AGG
-recovered snap_scaffold_839-snap.1-T1, terminal, 4059, 4164
-recovered snap_scaffold_839-snap.1-T1, internal, 1913, 2164
-recovered snap_scaffold_839-snap.1-T1, internal, 3389, 3532

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1441, 1720
Sorry, prediction snap_scaffold_839-snap.2-T1 fails validation.
(AAC)	 AG	1441-1720	GT	CAG
-recovered snap_scaffold_839-snap.2-T1, internal, 1441, 1720
Valid prediction for GlimmerHMM_glimmerT_60780-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4164, rend_intergenic: 2539  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4258
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4164, rend_intergenic: 2539  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support