-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_838

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60779-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60779-T1 1128-1551-terminal-1 is invalid.
Valid prediction for snap_scaffold_838-snap.2-T1
Couldn't classify 4086, 4241
Sorry, prediction snap_scaffold_838-snap.3-T1 fails validation.
(ATG)	 TG	3579-3638	GT	GGG
(TGG)	 AG	4086-4241	GT	AGG
-recovered snap_scaffold_838-snap.3-T1, initial, 3579, 3638
-recovered snap_scaffold_838-snap.3-T1, internal, 4086, 4241

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3429, 3575
Sorry, prediction Augustus_model.g40230.t1 fails validation.
(ATG)	 CC	3189-3239	GT	AGG
(AGA)	 AG	3429-3575	GT	GGG
-recovered Augustus_model.g40230.t1, initial, 3189, 3239
-recovered Augustus_model.g40230.t1, internal, 3429, 3575
Couldn't classify 3125, 3239
Couldn't classify 3429, 3575
Sorry, prediction snap_scaffold_838-snap.1-T1 fails validation.
(TGT)	 AG	3125-3239	GT	AGG
(AGA)	 AG	3429-3575	GT	GGG
-recovered snap_scaffold_838-snap.1-T1, internal, 3125, 3239
-recovered snap_scaffold_838-snap.1-T1, internal, 3429, 3575

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4262
-exon list size: 8


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support