-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_837

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 237, 475
Couldn't classify 3356, 3562
Sorry, prediction snap_scaffold_837-snap.1-T1 fails validation.
(AGT)	 AG	237-475	GT	CGG
(GTT)	 AG	1088-1224	GT	AGG
(GTG)	 AG	1992-2078	GT	TGG
(CCC)	 AG	3356-3562	GT	ACG
-recovered snap_scaffold_837-snap.1-T1, internal, 237, 475
-recovered snap_scaffold_837-snap.1-T1, internal, 1088, 1224
-recovered snap_scaffold_837-snap.1-T1, internal, 1992, 2078
-recovered snap_scaffold_837-snap.1-T1, internal, 3356, 3562

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 730, 934
Sorry, prediction Augustus_model.g40229.t1 fails validation.
(TGA)	 AG	730-934	GT	AGG
(GCT)	 AG	1397-1460	GT	AGG
(CGA)	 AG	2164-2280	GA	AAG
-recovered Augustus_model.g40229.t1, terminal, 2164, 2280
-recovered Augustus_model.g40229.t1, internal, 730, 934
-recovered Augustus_model.g40229.t1, internal, 1397, 1460
Couldn't classify 730, 934
Sorry, prediction GlimmerHMM_glimmerT_60778-T1 fails validation.
(TGA)	 AG	730-934	GT	AGG
(GCT)	 AG	1397-1460	GT	AGG
(CGA)	 AG	2164-2280	GA	AAG
-recovered GlimmerHMM_glimmerT_60778-T1, terminal, 2164, 2280
-recovered GlimmerHMM_glimmerT_60778-T1, internal, 730, 934
-recovered GlimmerHMM_glimmerT_60778-T1, internal, 1397, 1460
Couldn't classify 730, 934
Couldn't classify 2164, 2276
Sorry, prediction snap_scaffold_837-snap.2-T1 fails validation.
(TGA)	 AG	730-934	GT	AGG
(GCT)	 AG	1397-1460	GT	AGG
(TTT)	 AG	1835-1918	GT	CAG
(CGA)	 AG	2164-2276	GT	CTG
-recovered snap_scaffold_837-snap.2-T1, internal, 730, 934
-recovered snap_scaffold_837-snap.2-T1, internal, 1397, 1460
-recovered snap_scaffold_837-snap.2-T1, internal, 1835, 1918
-recovered snap_scaffold_837-snap.2-T1, internal, 2164, 2276

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3562, rend_intergenic: 1990  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4265
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3562, rend_intergenic: 1990  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support