-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_834

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4008, 4070
Sorry, prediction snap_scaffold_834-snap.1-T1 fails validation.
(ATG)	 TA	2385-2402	GT	CTG
(GGA)	 AG	2624-2800	GT	AGG
(AGC)	 AG	4008-4070	GT	AGG
-recovered snap_scaffold_834-snap.1-T1, initial, 2385, 2402
-recovered snap_scaffold_834-snap.1-T1, internal, 2624, 2800
-recovered snap_scaffold_834-snap.1-T1, internal, 4008, 4070

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for HiQ_model.g40227.t1
Couldn't classify 179, 287
Sorry, prediction snap_scaffold_834-snap.2-T1 fails validation.
(GAG)	 AG	179-287	GT	AGG
(GCA)	 AG	684-771	GT	GTG
(GCC)	 AG	1661-1729	GT	TGG
(AAA)	 AG	1847-1876	CA	GAC
-recovered snap_scaffold_834-snap.2-T1, terminal, 1847, 1876
-recovered snap_scaffold_834-snap.2-T1, internal, 179, 287
-recovered snap_scaffold_834-snap.2-T1, internal, 684, 771
-recovered snap_scaffold_834-snap.2-T1, internal, 1661, 1729

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4070, rend_intergenic: 2404  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4279
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4070, rend_intergenic: 2404  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support