-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_83

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 18313, 18546
Sorry, prediction GlimmerHMM_glimmerT_59735-T1 fails validation.
(ATG)	 GG	16630-16756	GT	AGG
(GGA)	 AG	18313-18546	GT	AGG
-recovered GlimmerHMM_glimmerT_59735-T1, initial, 16630, 16756
-recovered GlimmerHMM_glimmerT_59735-T1, internal, 18313, 18546
Couldn't classify 18313, 18546
Sorry, prediction snap_scaffold_83-snap.3-T1 fails validation.
(ATG)	 TC	11425-11631	GT	GGG
(TTC)	 AG	15606-16257	GT	AGG
(GGA)	 AG	18313-18546	GT	AGG
-recovered snap_scaffold_83-snap.3-T1, initial, 11425, 11631
-recovered snap_scaffold_83-snap.3-T1, internal, 15606, 16257
-recovered snap_scaffold_83-snap.3-T1, internal, 18313, 18546
Valid prediction for GlimmerHMM_glimmerT_59734-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 914, 1024
Sorry, prediction snap_scaffold_83-snap.2-T1 fails validation.
(GGG)	 AG	914-1024	GT	AGG
(GGG)	 AG	2762-2994	GT	AGG
(GTG)	 AG	3070-3370	GT	AGG
(AAT)	 AG	7612-7708	GT	GCG
(CGA)	 AG	10136-10200	TT	AGT
-recovered snap_scaffold_83-snap.2-T1, terminal, 10136, 10200
-recovered snap_scaffold_83-snap.2-T1, internal, 914, 1024
-recovered snap_scaffold_83-snap.2-T1, internal, 2762, 2994
-recovered snap_scaffold_83-snap.2-T1, internal, 3070, 3370
-recovered snap_scaffold_83-snap.2-T1, internal, 7612, 7708
Valid prediction for snap_scaffold_83-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18056, rend_intergenic: 11425  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 18969
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 18056, rend_intergenic: 11425  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support