-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_826

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 524, 688
Couldn't classify 2709, 2814
Sorry, prediction snap_scaffold_826-snap.1-T1 fails validation.
(GAC)	 AG	524-688	GT	AGG
(GGG)	 AG	2406-2416	GT	TGG
(ACG)	 AG	2709-2814	GT	ATG
add_exon() Sorry, snap_scaffold_826-snap.1-T1 524-688-terminal-1 is invalid.
-recovered snap_scaffold_826-snap.1-T1, terminal, 524, 688
-recovered snap_scaffold_826-snap.1-T1, internal, 524, 688
-recovered snap_scaffold_826-snap.1-T1, internal, 2406, 2416
-recovered snap_scaffold_826-snap.1-T1, internal, 2709, 2814
Valid prediction for GlimmerHMM_glimmerT_60769-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60769-T1 524-720-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40222.t1
Couldn't classify 1124, 1261
Sorry, prediction snap_scaffold_826-snap.2-T1 fails validation.
(GTC)	 AG	1124-1261	GT	GGG
(CGA)	 AG	2514-2806	CA	AGC
-recovered snap_scaffold_826-snap.2-T1, terminal, 2514, 2806
-recovered snap_scaffold_826-snap.2-T1, internal, 1124, 1261
Couldn't classify 1124, 1261
Sorry, prediction GlimmerHMM_glimmerT_60770-T1 fails validation.
(GTC)	 AG	1124-1261	GT	GGG
(CGA)	 AG	2514-2806	CA	AGC
-recovered GlimmerHMM_glimmerT_60770-T1, terminal, 2514, 2806
-recovered GlimmerHMM_glimmerT_60770-T1, internal, 1124, 1261

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2814, rend_intergenic: 1514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4319
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2814, rend_intergenic: 1514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support