-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_818

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 900, 1037
Sorry, prediction GlimmerHMM_glimmerT_60765-T1 fails validation.
(CTC)	 AG	900-1037	GT	AGG
(GAG)	 AG	4202-4300	AG	AGA
-recovered GlimmerHMM_glimmerT_60765-T1, terminal, 4202, 4300
-recovered GlimmerHMM_glimmerT_60765-T1, internal, 900, 1037
Couldn't classify 4202, 4288
Sorry, prediction Augustus_model.g40220.t1 fails validation.
(ATG)	 TG	216-221	GT	TGG
(CTC)	 AG	900-1037	GT	AGG
(GAG)	 AG	4202-4288	GT	AGG
-recovered Augustus_model.g40220.t1, initial, 216, 221
-recovered Augustus_model.g40220.t1, internal, 900, 1037
-recovered Augustus_model.g40220.t1, internal, 4202, 4288
Couldn't classify 4202, 4288
Sorry, prediction snap_scaffold_818-snap.1-T1 fails validation.
(ATG)	 TC	3350-3501	GT	TTG
(AGA)	 AG	3584-3755	GT	TTG
(GAG)	 AG	4202-4288	GT	AGG
-recovered snap_scaffold_818-snap.1-T1, initial, 3350, 3501
-recovered snap_scaffold_818-snap.1-T1, internal, 3584, 3755
-recovered snap_scaffold_818-snap.1-T1, internal, 4202, 4288
Couldn't classify 900, 1037
Sorry, prediction snap_scaffold_818-snap.2-T1 fails validation.
(CTC)	 AG	900-1037	GT	AGG
(AGA)	 AG	1063-3261	CC	AGC
-recovered snap_scaffold_818-snap.2-T1, terminal, 1063, 3261
-recovered snap_scaffold_818-snap.2-T1, internal, 900, 1037

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4336
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support