-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_810

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3702, 3935
Sorry, prediction snap_scaffold_810-snap.3-T1 fails validation.
(ATG)	 TC	2940-3041	GT	AGG
(CGC)	 AG	3702-3935	GT	AGG
-recovered snap_scaffold_810-snap.3-T1, initial, 2940, 3041
-recovered snap_scaffold_810-snap.3-T1, internal, 3702, 3935
Couldn't classify 3702, 3935
Sorry, prediction GlimmerHMM_glimmerT_60751-T1 fails validation.
(ATG)	 GC	1204-1800	GT	AGG
(GAC)	 AG	2958-3041	GT	AGG
(CGC)	 AG	3702-3935	GT	AGG
-recovered GlimmerHMM_glimmerT_60751-T1, initial, 1204, 1800
-recovered GlimmerHMM_glimmerT_60751-T1, internal, 2958, 3041
-recovered GlimmerHMM_glimmerT_60751-T1, internal, 3702, 3935
Valid prediction for snap_scaffold_810-snap.1-T1
Valid prediction for HiQ_model.g40217.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_810-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4318, rend_intergenic: 2940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4358
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4318, rend_intergenic: 2940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support