-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_81

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_81-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_59727-T1
Valid prediction for snap_scaffold_81-snap.4-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 19698, 19752
Sorry, prediction Augustus_model.g39572.t1 fails validation.
(ATG)	 AA	18788-18869	GT	AGG
(GAA)	 AG	19050-19125	GT	GGG
(TCC)	 AG	19457-19559	GT	TGG
(CTA)	 AG	19698-19752	GT	AGG
-recovered Augustus_model.g39572.t1, initial, 18788, 18869
-recovered Augustus_model.g39572.t1, internal, 19050, 19125
-recovered Augustus_model.g39572.t1, internal, 19457, 19559
-recovered Augustus_model.g39572.t1, internal, 19698, 19752
Valid prediction for GlimmerHMM_glimmerT_59725-T1
Valid prediction for GlimmerHMM_glimmerT_59729-T1
add_exon() Sorry, GlimmerHMM_glimmerT_59729-T1 83-239-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_59728-T1
Valid prediction for GlimmerHMM_glimmerT_59726-T1
Valid prediction for snap_scaffold_81-snap.3-T1
Couldn't classify 19702, 19752
Sorry, prediction snap_scaffold_81-snap.1-T1 fails validation.
(ATG)	 TC	19043-19125	GT	GGG
(TCC)	 AG	19457-19559	GT	TGG
(AGA)	 AG	19702-19752	GT	AGG
-recovered snap_scaffold_81-snap.1-T1, initial, 19043, 19125
-recovered snap_scaffold_81-snap.1-T1, internal, 19457, 19559
-recovered snap_scaffold_81-snap.1-T1, internal, 19702, 19752

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17113, rend_intergenic: 2559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18984, rend_intergenic: 17636  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 19956
-exon list size: 39


building trellis

2.4    
4.9    
7.3    
9.8    
12.2    
14.6    
17.1    
19.5    
22.0    
24.4    
26.8    
29.3    
31.7    
34.1    
36.6    
39.0    
41.5    
43.9    
46.3    
48.8    
51.2    
53.7    
56.1    
58.5    
61.0    
63.4    
65.9    
68.3    
70.7    
73.2    
75.6    
78.0    
80.5    
82.9    
85.4    
87.8    
90.2    
92.7    
95.1    
97.6    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 17113, rend_intergenic: 2559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18984, rend_intergenic: 17636  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support