-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_804

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60748-T1
Valid prediction for snap_scaffold_804-snap.2-T1
Valid prediction for snap_scaffold_804-snap.3-T1
add_exon() Sorry, snap_scaffold_804-snap.3-T1 258-441-terminal-1 is invalid.
Couldn't classify 2228, 2351
Sorry, prediction snap_scaffold_804-snap.1-T1 fails validation.
(ATG)	 AG	1273-1376	GT	GTG
(AGG)	 AG	2228-2351	GT	CGG
-recovered snap_scaffold_804-snap.1-T1, initial, 1273, 1376
-recovered snap_scaffold_804-snap.1-T1, internal, 1273, 1376
-recovered snap_scaffold_804-snap.1-T1, internal, 2228, 2351

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4389
-exon list size: 8


building trellis

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-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support