-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_802

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 180, 218
Sorry, prediction GlimmerHMM_glimmerT_60746-T1 fails validation.
(CTG)	 AG	180-218	GT	AGG
(GCC)	 AG	312-512	GA	GAG
-recovered GlimmerHMM_glimmerT_60746-T1, terminal, 312, 512
-recovered GlimmerHMM_glimmerT_60746-T1, internal, 180, 218
Couldn't classify 180, 218
Couldn't classify 1533, 1571
Sorry, prediction snap_scaffold_802-snap.1-T1 fails validation.
(CTG)	 AG	180-218	GT	AGG
(GCC)	 AG	312-506	GT	AGG
(AAC)	 AG	1533-1571	GT	TGG
-recovered snap_scaffold_802-snap.1-T1, internal, 180, 218
-recovered snap_scaffold_802-snap.1-T1, internal, 312, 506
-recovered snap_scaffold_802-snap.1-T1, internal, 1533, 1571

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4402
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support