-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_9317983-9528449

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.1815-T1
Valid prediction for GlimmerHMM_glimmerT_20307-T1
Valid prediction for snap_scaffold_8-snap.1832-T1
Valid prediction for GlimmerHMM_glimmerT_20304-T1
Couldn't classify 64814, 64883
Sorry, prediction pasa_asmbl_53075.p1 fails validation.
(TAC)	 AT	64814-64883	GT	TGG
(TCG)	 AG	65256-65318	GT	ACG
(CCA)	 AG	65518-65615	GT	AGG
(GTG)	 AG	65773-65922	GT	AGG
(ATT)	 AG	66038-66163	GT	AGG
(GTG)	 AG	66279-66398	GT	AGG
(GTG)	 AG	66548-66715	CT	AAC
-recovered pasa_asmbl_53075.p1, terminal, 66548, 66715
-recovered pasa_asmbl_53075.p1, internal, 65256, 65318
-recovered pasa_asmbl_53075.p1, internal, 65518, 65615
-recovered pasa_asmbl_53075.p1, internal, 65773, 65922
-recovered pasa_asmbl_53075.p1, internal, 66038, 66163
-recovered pasa_asmbl_53075.p1, internal, 66279, 66398
Valid prediction for GlimmerHMM_glimmerT_20296-T1
Valid prediction for HiQ_model.g13495.t1
Valid prediction for GlimmerHMM_glimmerT_20283-T1
Valid prediction for pasa_asmbl_53072.p1
Valid prediction for snap_scaffold_8-snap.1842-T1
Valid prediction for snap_scaffold_8-snap.1849-T1
Valid prediction for GlimmerHMM_glimmerT_20308-T1
Valid prediction for snap_scaffold_8-snap.1847-T1
Couldn't classify 43660, 43820
Sorry, prediction pasa_asmbl_53073.p1 fails validation.
(ATG)	 CC	42918-42971	GT	AGG
(CCG)	 AG	43324-43480	GT	AGG
(GGC)	 AG	43660-43820	GG	GGG
-recovered pasa_asmbl_53073.p1, initial, 42918, 42971
-recovered pasa_asmbl_53073.p1, internal, 43324, 43480
Valid prediction for snap_scaffold_8-snap.1823-T1
Valid prediction for GlimmerHMM_glimmerT_20311-T1
Valid prediction for GlimmerHMM_glimmerT_20297-T1
Valid prediction for snap_scaffold_8-snap.1841-T1
Valid prediction for GlimmerHMM_glimmerT_20300-T1
Valid prediction for snap_scaffold_8-snap.1856-T1
Valid prediction for snap_scaffold_8-snap.1826-T1
Valid prediction for Augustus_model.g13499.t1
Valid prediction for GlimmerHMM_glimmerT_20305-T1
Valid prediction for snap_scaffold_8-snap.1853-T1
Valid prediction for Augustus_model.g13508.t1
Valid prediction for snap_scaffold_8-snap.1852-T1
Valid prediction for CodingQuarry_transcript_59741-T1
Valid prediction for GlimmerHMM_glimmerT_20289-T1
Valid prediction for snap_scaffold_8-snap.1817-T1
Valid prediction for GlimmerHMM_glimmerT_20281-T1
Valid prediction for GlimmerHMM_glimmerT_20291-T1
Valid prediction for Augustus_model.g13498.t1
Valid prediction for GlimmerHMM_glimmerT_20279-T1
Valid prediction for snap_scaffold_8-snap.1858-T1
Valid prediction for GlimmerHMM_glimmerT_20290-T1
Valid prediction for snap_scaffold_8-snap.1840-T1
Couldn't classify 81265, 81370
Sorry, prediction pasa_asmbl_53076.p1 fails validation.
(GTC)	 CA	81265-81370	GT	AGG
(GTG)	 AG	81634-81694	GT	AGG
(TTC)	 AG	81947-82032	GT	AGG
(CGG)	 AG	82510-82673	GT	AGG
(GTG)	 AG	82799-82851	GT	GGG
(CAG)	 AG	83071-83174	GT	AAG
(TTG)	 AG	84082-84146	TT	GAT
-recovered pasa_asmbl_53076.p1, terminal, 84082, 84146
-recovered pasa_asmbl_53076.p1, internal, 81634, 81694
-recovered pasa_asmbl_53076.p1, internal, 81947, 82032
-recovered pasa_asmbl_53076.p1, internal, 82510, 82673
-recovered pasa_asmbl_53076.p1, internal, 82799, 82851
-recovered pasa_asmbl_53076.p1, internal, 83071, 83174
Valid prediction for Augustus_model.g13502.t1
Valid prediction for snap_scaffold_8-snap.1816-T1
Valid prediction for HiQ_model.g13494.t1
Valid prediction for GlimmerHMM_glimmerT_20306-T1
Valid prediction for snap_scaffold_8-snap.1848-T1
Valid prediction for snap_scaffold_8-snap.1830-T1
Valid prediction for Augustus_model.g13507.t1
Valid prediction for snap_scaffold_8-snap.1827-T1
Valid prediction for GlimmerHMM_glimmerT_20294-T1
Valid prediction for snap_scaffold_8-snap.1814-T1
Valid prediction for GlimmerHMM_glimmerT_20292-T1
Valid prediction for snap_scaffold_8-snap.1857-T1
Valid prediction for snap_scaffold_8-snap.1854-T1
Valid prediction for GlimmerHMM_glimmerT_20287-T1
Valid prediction for GlimmerHMM_glimmerT_20302-T1
Valid prediction for snap_scaffold_8-snap.1834-T1
Valid prediction for HiQ_model.g13491.t1
Valid prediction for snap_scaffold_8-snap.1825-T1
Valid prediction for GlimmerHMM_glimmerT_20299-T1
Valid prediction for CodingQuarry_transcript_59742-T1
Valid prediction for GlimmerHMM_glimmerT_20286-T1
Valid prediction for snap_scaffold_8-snap.1831-T1
Valid prediction for Augustus_model.g13505.t1
Valid prediction for pasa_asmbl_53619.p1
Valid prediction for snap_scaffold_8-snap.1844-T1
Valid prediction for CodingQuarry_transcript_59737-T1
Valid prediction for GlimmerHMM_glimmerT_20278-T1
Valid prediction for HiQ_model.g13497.t1
Valid prediction for GlimmerHMM_glimmerT_20310-T1
Valid prediction for snap_scaffold_8-snap.1813-T1
Valid prediction for GlimmerHMM_glimmerT_20284-T1
Valid prediction for snap_scaffold_8-snap.1838-T1
Valid prediction for snap_scaffold_8-snap.1818-T1
Valid prediction for Augustus_model.g13492.t1
Couldn't classify 166010, 166144
Sorry, prediction pasa_asmbl_53081.p1 fails validation.
(CAG)	 AC	166010-166144	GT	AGG
(GTG)	 AG	166240-166330	GT	AGG
(GGC)	 AG	166444-166657	GT	TGG
(CAA)	 AG	166800-167004	GT	AGG
(GGA)	 AG	167231-167362	GT	AGG
(GGT)	 AG	167599-168063	AG	AGA
-recovered pasa_asmbl_53081.p1, terminal, 167599, 168063
-recovered pasa_asmbl_53081.p1, internal, 166240, 166330
-recovered pasa_asmbl_53081.p1, internal, 166444, 166657
-recovered pasa_asmbl_53081.p1, internal, 166800, 167004
-recovered pasa_asmbl_53081.p1, internal, 167231, 167362
Valid prediction for GlimmerHMM_glimmerT_20280-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_20293-T1
Valid prediction for snap_scaffold_8-snap.1845-T1
Valid prediction for snap_scaffold_8-snap.1819-T1
Valid prediction for snap_scaffold_8-snap.1822-T1
Valid prediction for snap_scaffold_8-snap.1851-T1
Valid prediction for snap_scaffold_8-snap.1837-T1
Valid prediction for CodingQuarry_transcript_59740-T1
Valid prediction for snap_scaffold_8-snap.1820-T1
Valid prediction for GlimmerHMM_glimmerT_20295-T1
Valid prediction for snap_scaffold_8-snap.1833-T1
Valid prediction for GlimmerHMM_glimmerT_20285-T1
Valid prediction for CodingQuarry_transcript_59738-T1
Valid prediction for snap_scaffold_8-snap.1821-T1
Valid prediction for Augustus_model.g13506.t1
Valid prediction for snap_scaffold_8-snap.1812-T1
Valid prediction for GlimmerHMM_glimmerT_20303-T1
Valid prediction for pasa_asmbl_52039.p1
Valid prediction for pasa_asmbl_52042.p1
Valid prediction for snap_scaffold_8-snap.1850-T1
Valid prediction for Augustus_model.g13496.t1
Valid prediction for HiQ_model.g13504.t1
Valid prediction for pasa_asmbl_52035.p1
Couldn't classify 17645, 17724
Couldn't classify 17935, 18193
Sorry, prediction pasa_asmbl_52630.p1 fails validation.
(GGT)	 GA	17645-17724	GT	AGG
(TAT)	 AG	17935-18193	CA	CGC
Valid prediction for snap_scaffold_8-snap.1855-T1
Valid prediction for snap_scaffold_8-snap.1836-T1
Valid prediction for snap_scaffold_8-snap.1835-T1
Valid prediction for HiQ_model.g13500.t1
Valid prediction for GlimmerHMM_glimmerT_20288-T1
Valid prediction for snap_scaffold_8-snap.1828-T1
Valid prediction for Augustus_model.g13501.t1
Valid prediction for GlimmerHMM_glimmerT_20301-T1
Couldn't classify 20068, 20157
Sorry, prediction pasa_asmbl_52049.p1 fails validation.
(ACT)	 CC	20068-20157	GT	AGG
(GGG)	 AG	22178-22316	GT	AGG
(GTA)	 AG	23619-23769	GT	TGG
(GTA)	 AG	23954-24072	GT	AGG
(CGT)	 AG	24221-24714	CG	GAC
-recovered pasa_asmbl_52049.p1, terminal, 24221, 24714
-recovered pasa_asmbl_52049.p1, internal, 22178, 22316
-recovered pasa_asmbl_52049.p1, internal, 23619, 23769
-recovered pasa_asmbl_52049.p1, internal, 23954, 24072
Valid prediction for snap_scaffold_8-snap.1824-T1
Valid prediction for CodingQuarry_transcript_59744-T1
Couldn't classify 50960, 51036
Couldn't classify 51210, 51376
Sorry, prediction CodingQuarry_transcript_59745-T1 fails validation.
(ATG)	 AT	47309-47393	GT	AAG
(GTA)	 AG	47680-47740	GT	TGG
(TGG)	 AG	48012-48128	GT	ATG
(GCC)	 AG	48280-48333	GT	AGG
(GAA)	 AG	48436-48525	GT	AGG
(GCA)	 AG	48690-48741	GT	AGG
(ACC)	 AG	48938-49026	GT	AGG
(TCC)	 AG	49201-49318	GT	AGG
(AGC)	 AG	49461-49592	GT	TGG
(GAG)	 AG	49855-49926	GT	TGG
(GAA)	 AG	50480-50604	GT	AGG
(CCT)	 AG	50705-50753	GT	AGG
(GCA)	 AG	50960-51036	GG	ATG
(AGG)	 AC	51210-51376	GT	AGG
(CTC)	 AG	51573-51583	AC	GAA
-recovered CodingQuarry_transcript_59745-T1, initial, 47309, 47393
-recovered CodingQuarry_transcript_59745-T1, terminal, 51573, 51583
-recovered CodingQuarry_transcript_59745-T1, internal, 47680, 47740
-recovered CodingQuarry_transcript_59745-T1, internal, 48012, 48128
-recovered CodingQuarry_transcript_59745-T1, internal, 48280, 48333
-recovered CodingQuarry_transcript_59745-T1, internal, 48436, 48525
-recovered CodingQuarry_transcript_59745-T1, internal, 48690, 48741
-recovered CodingQuarry_transcript_59745-T1, internal, 48938, 49026
-recovered CodingQuarry_transcript_59745-T1, internal, 49201, 49318
-recovered CodingQuarry_transcript_59745-T1, internal, 49461, 49592
-recovered CodingQuarry_transcript_59745-T1, internal, 49855, 49926
-recovered CodingQuarry_transcript_59745-T1, internal, 50480, 50604
-recovered CodingQuarry_transcript_59745-T1, internal, 50705, 50753
Valid prediction for CodingQuarry_transcript_59743-T1
Valid prediction for Augustus_model.g13493.t1
Valid prediction for GlimmerHMM_glimmerT_20282-T1
Valid prediction for HiQ_model.g13503.t1
Valid prediction for snap_scaffold_8-snap.1843-T1
Valid prediction for GlimmerHMM_glimmerT_20298-T1
Valid prediction for GlimmerHMM_glimmerT_20309-T1
Valid prediction for GlimmerHMM_glimmerT_20277-T1
Valid prediction for snap_scaffold_8-snap.1829-T1
Valid prediction for CodingQuarry_transcript_59739-T1
Valid prediction for snap_scaffold_8-snap.1839-T1
Valid prediction for pasa_asmbl_52028.p1
Valid prediction for snap_scaffold_8-snap.1846-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 28656, rend_intergenic: 7060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47922, rend_intergenic: 39734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59743, rend_intergenic: 54244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73292, rend_intergenic: 68876  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80693, rend_intergenic: 74936  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94849, rend_intergenic: 88305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109309, rend_intergenic: 103598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109896, rend_intergenic: 109472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124546, rend_intergenic: 110121  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127475, rend_intergenic: 125688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132833, rend_intergenic: 128685  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135801, rend_intergenic: 134160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154240, rend_intergenic: 141647  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173031, rend_intergenic: 164808  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180143, rend_intergenic: 175113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195817, rend_intergenic: 180156  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 210467
-exon list size: 477


building trellis

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99.8    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 28656, rend_intergenic: 7060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47922, rend_intergenic: 39734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59743, rend_intergenic: 54244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73292, rend_intergenic: 68876  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80693, rend_intergenic: 74936  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94849, rend_intergenic: 88305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109309, rend_intergenic: 103598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109896, rend_intergenic: 109472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124546, rend_intergenic: 110121  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127475, rend_intergenic: 125688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132833, rend_intergenic: 128685  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135801, rend_intergenic: 134160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154240, rend_intergenic: 141647  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173031, rend_intergenic: 164808  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180143, rend_intergenic: 175113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195817, rend_intergenic: 180156  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support