-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_8305260-8522842

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_20152-T1
Valid prediction for snap_scaffold_8-snap.1645-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_20144-T1
Valid prediction for snap_scaffold_8-snap.1619-T1
Valid prediction for snap_scaffold_8-snap.1639-T1
Valid prediction for Augustus_model.g13397.t1
Valid prediction for Augustus_model.g13395.t1
Valid prediction for snap_scaffold_8-snap.1628-T1
Valid prediction for GlimmerHMM_glimmerT_20148-T1
Valid prediction for GlimmerHMM_glimmerT_20146-T1
Valid prediction for GlimmerHMM_glimmerT_20145-T1
Valid prediction for snap_scaffold_8-snap.1622-T1
Valid prediction for GlimmerHMM_glimmerT_20142-T1
Valid prediction for GlimmerHMM_glimmerT_20150-T1
Couldn't classify 67854, 67932
Sorry, prediction pasa_asmbl_53013.p1 fails validation.
(CCA)	 TC	67854-67932	GT	CGG
(AGG)	 AG	68932-69183	GT	GGG
(ATG)	 AG	69836-69912	GT	TGG
(GAT)	 AG	70848-71029	GT	ATG
(GGA)	 AG	71677-71759	GT	AGG
(ACA)	 AG	71888-72073	GT	AGG
(TGG)	 AG	72461-72634	GT	GAG
(ACG)	 AG	72745-72815	GT	AGG
(GGA)	 AG	73427-73471	GT	AGG
(CAG)	 AG	73569-73619	GT	AGG
(GCG)	 AG	73745-74203	GT	AGG
(AGG)	 AG	74760-75063	GT	AGG
(ATG)	 AG	75240-75295	CA	GAC
-recovered pasa_asmbl_53013.p1, initial, 69836, 69912
-recovered pasa_asmbl_53013.p1, terminal, 75240, 75295
-recovered pasa_asmbl_53013.p1, internal, 68932, 69183
-recovered pasa_asmbl_53013.p1, internal, 69836, 69912
-recovered pasa_asmbl_53013.p1, internal, 70848, 71029
-recovered pasa_asmbl_53013.p1, internal, 71677, 71759
-recovered pasa_asmbl_53013.p1, internal, 71888, 72073
-recovered pasa_asmbl_53013.p1, internal, 72461, 72634
-recovered pasa_asmbl_53013.p1, internal, 72745, 72815
-recovered pasa_asmbl_53013.p1, internal, 73427, 73471
-recovered pasa_asmbl_53013.p1, internal, 73569, 73619
-recovered pasa_asmbl_53013.p1, internal, 73745, 74203
-recovered pasa_asmbl_53013.p1, internal, 74760, 75063
Valid prediction for GlimmerHMM_glimmerT_20147-T1
Valid prediction for snap_scaffold_8-snap.1627-T1
Valid prediction for snap_scaffold_8-snap.1624-T1
Valid prediction for snap_scaffold_8-snap.1643-T1
Valid prediction for snap_scaffold_8-snap.1642-T1
Valid prediction for GlimmerHMM_glimmerT_20162-T1
Valid prediction for GlimmerHMM_glimmerT_20157-T1
Valid prediction for GlimmerHMM_glimmerT_20160-T1
Couldn't classify 60145, 60187
Couldn't classify 65709, 65848
Sorry, prediction pasa_asmbl_53571.p1 fails validation.
(AAG)	 CC	60145-60187	GT	TGG
(ATA)	 AG	61337-61379	GT	AGG
(TAT)	 AG	61478-61589	GT	GGG
(GAA)	 AG	63846-64011	GT	AAG
(ACT)	 AG	65160-65227	GT	AGG
(TTC)	 AG	65434-65500	GT	ACG
(CTA)	 AG	65709-65848	AA	GCA
-recovered pasa_asmbl_53571.p1, internal, 61337, 61379
-recovered pasa_asmbl_53571.p1, internal, 61478, 61589
-recovered pasa_asmbl_53571.p1, internal, 63846, 64011
-recovered pasa_asmbl_53571.p1, internal, 65160, 65227
-recovered pasa_asmbl_53571.p1, internal, 65434, 65500
Valid prediction for Augustus_model.g13398.t1
Valid prediction for snap_scaffold_8-snap.1630-T1
Valid prediction for GlimmerHMM_glimmerT_20163-T1
Valid prediction for snap_scaffold_8-snap.1625-T1
Valid prediction for GlimmerHMM_glimmerT_20156-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.1621-T1
Valid prediction for GlimmerHMM_glimmerT_20161-T1
Valid prediction for GlimmerHMM_glimmerT_20154-T1
Valid prediction for snap_scaffold_8-snap.1632-T1
Valid prediction for snap_scaffold_8-snap.1636-T1
Valid prediction for Augustus_model.g13400.t1
Valid prediction for snap_scaffold_8-snap.1640-T1
Valid prediction for snap_scaffold_8-snap.1637-T1
Valid prediction for Augustus_model.g13399.t1
Valid prediction for snap_scaffold_8-snap.1629-T1
Valid prediction for Augustus_model.g13401.t1
Valid prediction for snap_scaffold_8-snap.1623-T1
Valid prediction for snap_scaffold_8-snap.1634-T1
Valid prediction for Augustus_model.g13396.t1
Valid prediction for Augustus_model.g13402.t1
Valid prediction for snap_scaffold_8-snap.1635-T1
Valid prediction for snap_scaffold_8-snap.1633-T1
Valid prediction for GlimmerHMM_glimmerT_20159-T1
Valid prediction for Augustus_model.g13394.t1
Valid prediction for snap_scaffold_8-snap.1617-T1
Valid prediction for GlimmerHMM_glimmerT_20139-T1
Valid prediction for snap_scaffold_8-snap.1618-T1
Valid prediction for GlimmerHMM_glimmerT_20140-T1
Valid prediction for snap_scaffold_8-snap.1620-T1
Valid prediction for GlimmerHMM_glimmerT_20151-T1
Valid prediction for snap_scaffold_8-snap.1626-T1
Valid prediction for GlimmerHMM_glimmerT_20153-T1
Valid prediction for snap_scaffold_8-snap.1638-T1
Valid prediction for snap_scaffold_8-snap.1641-T1
Valid prediction for GlimmerHMM_glimmerT_20158-T1
Valid prediction for snap_scaffold_8-snap.1644-T1
Valid prediction for GlimmerHMM_glimmerT_20149-T1
Valid prediction for Augustus_model.g13404.t1
Valid prediction for GlimmerHMM_glimmerT_20141-T1
Valid prediction for snap_scaffold_8-snap.1631-T1
Valid prediction for GlimmerHMM_glimmerT_20143-T1
Valid prediction for Augustus_model.g13403.t1
Valid prediction for GlimmerHMM_glimmerT_20155-T1
Valid prediction for Augustus_model.g13393.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 188789, rend_intergenic: 188786  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35840, rend_intergenic: 30105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49143, rend_intergenic: 44435  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52025, rend_intergenic: 49434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57196, rend_intergenic: 54575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75295, rend_intergenic: 65635  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 217583
-exon list size: 243


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.9    
3.3    
3.7    
4.1    
4.5    
4.9    
5.3    
5.7    
6.1    
6.5    
6.9    
7.3    
7.8    
8.2    
8.6    
9.0    
9.4    
9.8    
10.2    
10.6    
11.0    
11.4    
11.8    
12.2    
12.7    
13.1    
13.5    
13.9    
14.3    
14.7    
15.1    
15.5    
15.9    
16.3    
16.7    
17.1    
17.6    
18.0    
18.4    
18.8    
19.2    
19.6    
20.0    
20.4    
20.8    
21.2    
21.6    
22.0    
22.4    
22.9    
23.3    
23.7    
24.1    
24.5    
24.9    
25.3    
25.7    
26.1    
26.5    
26.9    
27.3    
27.8    
28.2    
28.6    
29.0    
29.4    
29.8    
30.2    
30.6    
31.0    
31.4    
31.8    
32.2    
32.7    
33.1    
33.5    
33.9    
34.3    
34.7    
35.1    
35.5    
35.9    
36.3    
36.7    
37.1    
37.6    
38.0    
38.4    
38.8    
39.2    
39.6    
40.0    
40.4    
40.8    
41.2    
41.6    
42.0    
42.4    
42.9    
43.3    
43.7    
44.1    
44.5    
44.9    
45.3    
45.7    
46.1    
46.5    
46.9    
47.3    
47.8    
48.2    
48.6    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.4    
51.8    
52.2    
52.7    
53.1    
53.5    
53.9    
54.3    
54.7    
55.1    
55.5    
55.9    
56.3    
56.7    
57.1    
57.6    
58.0    
58.4    
58.8    
59.2    
59.6    
60.0    
60.4    
60.8    
61.2    
61.6    
62.0    
62.4    
62.9    
63.3    
63.7    
64.1    
64.5    
64.9    
65.3    
65.7    
66.1    
66.5    
66.9    
67.3    
67.8    
68.2    
68.6    
69.0    
69.4    
69.8    
70.2    
70.6    
71.0    
71.4    
71.8    
72.2    
72.7    
73.1    
73.5    
73.9    
74.3    
74.7    
75.1    
75.5    
75.9    
76.3    
76.7    
77.1    
77.6    
78.0    
78.4    
78.8    
79.2    
79.6    
80.0    
80.4    
80.8    
81.2    
81.6    
82.0    
82.4    
82.9    
83.3    
83.7    
84.1    
84.5    
84.9    
85.3    
85.7    
86.1    
86.5    
86.9    
87.3    
87.8    
88.2    
88.6    
89.0    
89.4    
89.8    
90.2    
90.6    
91.0    
91.4    
91.8    
92.2    
92.7    
93.1    
93.5    
93.9    
94.3    
94.7    
95.1    
95.5    
95.9    
96.3    
96.7    
97.1    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 18 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 188789, rend_intergenic: 188786  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35840, rend_intergenic: 30105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49143, rend_intergenic: 44435  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52025, rend_intergenic: 49434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57196, rend_intergenic: 54575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75295, rend_intergenic: 65635  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support