-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_7929826-8042272

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g13359.t1
Valid prediction for snap_scaffold_8-snap.1547-T1
Valid prediction for snap_scaffold_8-snap.1534-T1
Valid prediction for snap_scaffold_8-snap.1555-T1
Valid prediction for snap_scaffold_8-snap.1548-T1
Valid prediction for snap_scaffold_8-snap.1532-T1
Valid prediction for snap_scaffold_8-snap.1541-T1
Valid prediction for Augustus_model.g13365.t1
Valid prediction for snap_scaffold_8-snap.1539-T1
Valid prediction for snap_scaffold_8-snap.1549-T1
Valid prediction for GlimmerHMM_glimmerT_20090-T1
Couldn't classify 11571, 11716
Sorry, prediction pasa_asmbl_53003.p1 fails validation.
(GGA)	 AG	11571-11716	GT	CGG
(CCT)	 AG	12632-12699	GT	AGG
(ATC)	 AG	12838-13172	TG	GAT
-recovered pasa_asmbl_53003.p1, terminal, 12838, 13172
-recovered pasa_asmbl_53003.p1, internal, 11571, 11716
-recovered pasa_asmbl_53003.p1, internal, 12632, 12699
Valid prediction for GlimmerHMM_glimmerT_20092-T1
Valid prediction for GlimmerHMM_glimmerT_20091-T1
Valid prediction for snap_scaffold_8-snap.1554-T1
Valid prediction for snap_scaffold_8-snap.1537-T1
Valid prediction for snap_scaffold_8-snap.1551-T1
Valid prediction for Augustus_model.g13357.t1
Valid prediction for GlimmerHMM_glimmerT_20085-T1
Valid prediction for GlimmerHMM_glimmerT_20082-T1
Valid prediction for snap_scaffold_8-snap.1533-T1
Valid prediction for Augustus_model.g13361.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_51939.p1
Valid prediction for snap_scaffold_8-snap.1535-T1
Valid prediction for CodingQuarry_transcript_59697-T1
Valid prediction for GlimmerHMM_glimmerT_20088-T1
Valid prediction for CodingQuarry_transcript_59698-T1
Valid prediction for snap_scaffold_8-snap.1540-T1
Valid prediction for snap_scaffold_8-snap.1550-T1
Valid prediction for GlimmerHMM_glimmerT_20083-T1
Valid prediction for GlimmerHMM_glimmerT_20084-T1
Valid prediction for Augustus_model.g13363.t1
Valid prediction for snap_scaffold_8-snap.1546-T1
Valid prediction for Augustus_model.g13358.t1
Valid prediction for snap_scaffold_8-snap.1543-T1
Valid prediction for GlimmerHMM_glimmerT_20093-T1
Valid prediction for snap_scaffold_8-snap.1536-T1
Valid prediction for snap_scaffold_8-snap.1552-T1
Valid prediction for pasa_asmbl_51942.p1
Valid prediction for snap_scaffold_8-snap.1545-T1
Valid prediction for snap_scaffold_8-snap.1542-T1
Valid prediction for Augustus_model.g13360.t1
Valid prediction for snap_scaffold_8-snap.1538-T1
Valid prediction for GlimmerHMM_glimmerT_20089-T1
Valid prediction for snap_scaffold_8-snap.1544-T1
Valid prediction for GlimmerHMM_glimmerT_20094-T1
Valid prediction for GlimmerHMM_glimmerT_20087-T1
Valid prediction for Augustus_model.g13362.t1
Valid prediction for Augustus_model.g13364.t1
Valid prediction for GlimmerHMM_glimmerT_20086-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 24009, rend_intergenic: 20779  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24711, rend_intergenic: 24606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29017, rend_intergenic: 25823  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31847, rend_intergenic: 29188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37320, rend_intergenic: 32132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78226, rend_intergenic: 65835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 112447
-exon list size: 146


building trellis

0.7    
1.4    
2.0    
2.7    
3.4    
4.1    
4.7    
5.4    
6.1    
6.8    
7.4    
8.1    
8.8    
9.5    
10.1    
10.8    
11.5    
12.2    
12.8    
13.5    
14.2    
14.9    
15.5    
16.2    
16.9    
17.6    
18.2    
18.9    
19.6    
20.3    
20.9    
21.6    
22.3    
23.0    
23.6    
24.3    
25.0    
25.7    
26.4    
27.0    
27.7    
28.4    
29.1    
29.7    
30.4    
31.1    
31.8    
32.4    
33.1    
33.8    
34.5    
35.1    
35.8    
36.5    
37.2    
37.8    
38.5    
39.2    
39.9    
40.5    
41.2    
41.9    
42.6    
43.2    
43.9    
44.6    
45.3    
45.9    
46.6    
47.3    
48.0    
48.6    
49.3    
50.0    
50.7    
51.4    
52.0    
52.7    
53.4    
54.1    
54.7    
55.4    
56.1    
56.8    
57.4    
58.1    
58.8    
59.5    
60.1    
60.8    
61.5    
62.2    
62.8    
63.5    
64.2    
64.9    
65.5    
66.2    
66.9    
67.6    
68.2    
68.9    
69.6    
70.3    
70.9    
71.6    
72.3    
73.0    
73.6    
74.3    
75.0    
75.7    
76.4    
77.0    
77.7    
78.4    
79.1    
79.7    
80.4    
81.1    
81.8    
82.4    
83.1    
83.8    
84.5    
85.1    
85.8    
86.5    
87.2    
87.8    
88.5    
89.2    
89.9    
90.5    
91.2    
91.9    
92.6    
93.2    
93.9    
94.6    
95.3    
95.9    
96.6    
97.3    
98.0    
98.6    
99.3    
-found 16 predictions from path traversal
Error with prediction: snap lend_intergenic: 24009, rend_intergenic: 20779  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24711, rend_intergenic: 24606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29017, rend_intergenic: 25823  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31847, rend_intergenic: 29188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37320, rend_intergenic: 32132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78226, rend_intergenic: 65835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 93086 - 112447
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 97214 - 112447
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support