-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_7757654-7933927

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.1512-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for pasa_asmbl_52997.p1
Valid prediction for snap_scaffold_8-snap.1525-T1
Valid prediction for snap_scaffold_8-snap.1515-T1
Valid prediction for snap_scaffold_8-snap.1528-T1
Valid prediction for snap_scaffold_8-snap.1509-T1
Valid prediction for Augustus_model.g13347.t1
Valid prediction for GlimmerHMM_glimmerT_20072-T1
Valid prediction for snap_scaffold_8-snap.1522-T1
Valid prediction for snap_scaffold_8-snap.1493-T1
Valid prediction for snap_scaffold_8-snap.1504-T1
Valid prediction for snap_scaffold_8-snap.1494-T1
Valid prediction for snap_scaffold_8-snap.1500-T1
Valid prediction for HiQ_model.g13340.t1
Valid prediction for snap_scaffold_8-snap.1508-T1
Valid prediction for snap_scaffold_8-snap.1531-T1
Valid prediction for snap_scaffold_8-snap.1517-T1
Valid prediction for GlimmerHMM_glimmerT_20059-T1
Valid prediction for GlimmerHMM_glimmerT_20063-T1
Valid prediction for snap_scaffold_8-snap.1491-T1
Valid prediction for snap_scaffold_8-snap.1513-T1
Valid prediction for snap_scaffold_8-snap.1514-T1
Valid prediction for snap_scaffold_8-snap.1499-T1
Valid prediction for snap_scaffold_8-snap.1495-T1
Valid prediction for CodingQuarry_transcript_59693-T1
Valid prediction for Augustus_model.g13343.t1
Valid prediction for GlimmerHMM_glimmerT_20080-T1
Valid prediction for GlimmerHMM_glimmerT_20062-T1
Valid prediction for pasa_asmbl_53000.p1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g13345.t1
Valid prediction for snap_scaffold_8-snap.1521-T1
Valid prediction for Augustus_model.g13351.t1
Valid prediction for GlimmerHMM_glimmerT_20068-T1
Valid prediction for snap_scaffold_8-snap.1506-T1
Valid prediction for snap_scaffold_8-snap.1526-T1
Valid prediction for GlimmerHMM_glimmerT_20060-T1
Valid prediction for snap_scaffold_8-snap.1510-T1
Valid prediction for snap_scaffold_8-snap.1516-T1
Valid prediction for GlimmerHMM_glimmerT_20061-T1
Valid prediction for GlimmerHMM_glimmerT_20075-T1
Valid prediction for GlimmerHMM_glimmerT_20073-T1
Valid prediction for Augustus_model.g13344.t1
Couldn't classify 65845, 66180
Sorry, prediction pasa_asmbl_51934.p1 fails validation.
(GAC)	 CA	65845-66180	CA	AGC
Valid prediction for GlimmerHMM_glimmerT_20077-T1
Valid prediction for snap_scaffold_8-snap.1490-T1
Valid prediction for HiQ_model.g13353.t1
Valid prediction for GlimmerHMM_glimmerT_20069-T1
Valid prediction for snap_scaffold_8-snap.1501-T1
Valid prediction for Augustus_model.g13337.t1
Valid prediction for CodingQuarry_transcript_59695-T1
Valid prediction for GlimmerHMM_glimmerT_20076-T1
Valid prediction for GlimmerHMM_glimmerT_20078-T1
Valid prediction for snap_scaffold_8-snap.1496-T1
Valid prediction for snap_scaffold_8-snap.1520-T1
Valid prediction for Augustus_model.g13338.t1
Valid prediction for snap_scaffold_8-snap.1503-T1
Valid prediction for pasa_asmbl_51936.p1
Valid prediction for pasa_asmbl_51937.p1
Valid prediction for HiQ_model.g13342.t1
Valid prediction for HiQ_model.g13356.t1
Valid prediction for GlimmerHMM_glimmerT_20067-T1
Valid prediction for snap_scaffold_8-snap.1492-T1
Valid prediction for HiQ_model.g13348.t1
Couldn't classify 112579, 113127
Sorry, prediction pasa_asmbl_51931.p1 fails validation.
(CGA)	 TA	112579-113127	GA	GAG
Valid prediction for Augustus_model.g13355.t1
Valid prediction for snap_scaffold_8-snap.1530-T1
Valid prediction for GlimmerHMM_glimmerT_20058-T1
Couldn't classify 91200, 91535
Sorry, prediction pasa_asmbl_51933.p2 fails validation.
(ATG)	 AG	91200-91535	TG	GGT
Valid prediction for HiQ_model.g13341.t1
Valid prediction for snap_scaffold_8-snap.1523-T1
Valid prediction for GlimmerHMM_glimmerT_20056-T1
Valid prediction for pasa_asmbl_51925.p1
Valid prediction for snap_scaffold_8-snap.1519-T1
Valid prediction for GlimmerHMM_glimmerT_20079-T1
Valid prediction for snap_scaffold_8-snap.1497-T1
Valid prediction for snap_scaffold_8-snap.1505-T1
Valid prediction for GlimmerHMM_glimmerT_20071-T1
Valid prediction for GlimmerHMM_glimmerT_20064-T1
Valid prediction for snap_scaffold_8-snap.1511-T1
Valid prediction for pasa_asmbl_51923.p1
Valid prediction for snap_scaffold_8-snap.1502-T1
Valid prediction for GlimmerHMM_glimmerT_20066-T1
Valid prediction for GlimmerHMM_glimmerT_20070-T1
Valid prediction for snap_scaffold_8-snap.1518-T1
Valid prediction for GlimmerHMM_glimmerT_20065-T1
Valid prediction for Augustus_model.g13339.t1
Valid prediction for snap_scaffold_8-snap.1498-T1
Valid prediction for snap_scaffold_8-snap.1507-T1
Valid prediction for GlimmerHMM_glimmerT_20074-T1
Valid prediction for snap_scaffold_8-snap.1524-T1
Valid prediction for Augustus_model.g13336.t1
Valid prediction for GlimmerHMM_glimmerT_20057-T1
Valid prediction for Augustus_model.g13349.t1
Valid prediction for Augustus_model.g13354.t1
Valid prediction for Augustus_model.g13346.t1
Valid prediction for Augustus_model.g13350.t1
Valid prediction for Augustus_model.g13352.t1
Valid prediction for snap_scaffold_8-snap.1529-T1
Valid prediction for snap_scaffold_8-snap.1527-T1
Valid prediction for CodingQuarry_transcript_59694-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7384, rend_intergenic: 5573  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13734, rend_intergenic: 8325  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23009, rend_intergenic: 18617  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59168, rend_intergenic: 54972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70848, rend_intergenic: 67319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81962, rend_intergenic: 72441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96112, rend_intergenic: 84143  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100863, rend_intergenic: 98735  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103071, rend_intergenic: 101871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146137, rend_intergenic: 141781  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150048, rend_intergenic: 148852  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153791, rend_intergenic: 150053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162506, rend_intergenic: 160940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173133, rend_intergenic: 169162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 176274
-exon list size: 368


building trellis

0.3    
0.5    
0.8    
1.1    
1.4    
1.6    
1.9    
2.2    
2.4    
2.7    
3.0    
3.2    
3.5    
3.8    
4.1    
4.3    
4.6    
4.9    
5.1    
5.4    
5.7    
5.9    
6.2    
6.5    
6.8    
7.0    
7.3    
7.6    
7.8    
8.1    
8.4    
8.6    
8.9    
9.2    
9.5    
9.7    
10.0    
10.3    
10.5    
10.8    
11.1    
11.4    
11.6    
11.9    
12.2    
12.4    
12.7    
13.0    
13.2    
13.5    
13.8    
14.1    
14.3    
14.6    
14.9    
15.1    
15.4    
15.7    
15.9    
16.2    
16.5    
16.8    
17.0    
17.3    
17.6    
17.8    
18.1    
18.4    
18.6    
18.9    
19.2    
19.5    
19.7    
20.0    
20.3    
20.5    
20.8    
21.1    
21.4    
21.6    
21.9    
22.2    
22.4    
22.7    
23.0    
23.2    
23.5    
23.8    
24.1    
24.3    
24.6    
24.9    
25.1    
25.4    
25.7    
25.9    
26.2    
26.5    
26.8    
27.0    
27.3    
27.6    
27.8    
28.1    
28.4    
28.6    
28.9    
29.2    
29.5    
29.7    
30.0    
30.3    
30.5    
30.8    
31.1    
31.4    
31.6    
31.9    
32.2    
32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.1    
34.3    
34.6    
34.9    
35.1    
35.4    
35.7    
35.9    
36.2    
36.5    
36.8    
37.0    
37.3    
37.6    
37.8    
38.1    
38.4    
38.6    
38.9    
39.2    
39.5    
39.7    
40.0    
40.3    
40.5    
40.8    
41.1    
41.4    
41.6    
41.9    
42.2    
42.4    
42.7    
43.0    
43.2    
43.5    
43.8    
44.1    
44.3    
44.6    
44.9    
45.1    
45.4    
45.7    
45.9    
46.2    
46.5    
46.8    
47.0    
47.3    
47.6    
47.8    
48.1    
48.4    
48.6    
48.9    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.1    
51.4    
51.6    
51.9    
52.2    
52.4    
52.7    
53.0    
53.2    
53.5    
53.8    
54.1    
54.3    
54.6    
54.9    
55.1    
55.4    
55.7    
55.9    
56.2    
56.5    
56.8    
57.0    
57.3    
57.6    
57.8    
58.1    
58.4    
58.6    
58.9    
59.2    
59.5    
59.7    
60.0    
60.3    
60.5    
60.8    
61.1    
61.4    
61.6    
61.9    
62.2    
62.4    
62.7    
63.0    
63.2    
63.5    
63.8    
64.1    
64.3    
64.6    
64.9    
65.1    
65.4    
65.7    
65.9    
66.2    
66.5    
66.8    
67.0    
67.3    
67.6    
67.8    
68.1    
68.4    
68.6    
68.9    
69.2    
69.5    
69.7    
70.0    
70.3    
70.5    
70.8    
71.1    
71.4    
71.6    
71.9    
72.2    
72.4    
72.7    
73.0    
73.2    
73.5    
73.8    
74.1    
74.3    
74.6    
74.9    
75.1    
75.4    
75.7    
75.9    
76.2    
76.5    
76.8    
77.0    
77.3    
77.6    
77.8    
78.1    
78.4    
78.6    
78.9    
79.2    
79.5    
79.7    
80.0    
80.3    
80.5    
80.8    
81.1    
81.4    
81.6    
81.9    
82.2    
82.4    
82.7    
83.0    
83.2    
83.5    
83.8    
84.1    
84.3    
84.6    
84.9    
85.1    
85.4    
85.7    
85.9    
86.2    
86.5    
86.8    
87.0    
87.3    
87.6    
87.8    
88.1    
88.4    
88.6    
88.9    
89.2    
89.5    
89.7    
90.0    
90.3    
90.5    
90.8    
91.1    
91.4    
91.6    
91.9    
92.2    
92.4    
92.7    
93.0    
93.2    
93.5    
93.8    
94.1    
94.3    
94.6    
94.9    
95.1    
95.4    
95.7    
95.9    
96.2    
96.5    
96.8    
97.0    
97.3    
97.6    
97.8    
98.1    
98.4    
98.6    
98.9    
99.2    
99.5    
99.7    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 7384, rend_intergenic: 5573  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13734, rend_intergenic: 8325  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23009, rend_intergenic: 18617  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59168, rend_intergenic: 54972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70848, rend_intergenic: 67319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81962, rend_intergenic: 72441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96112, rend_intergenic: 84143  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100863, rend_intergenic: 98735  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103071, rend_intergenic: 101871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146137, rend_intergenic: 141781  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150048, rend_intergenic: 148852  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153791, rend_intergenic: 150053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162506, rend_intergenic: 160940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173133, rend_intergenic: 169162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support