-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_7337884-7543523

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_20005-T1
Valid prediction for snap_scaffold_8-snap.1444-T1
Valid prediction for CodingQuarry_transcript_59687-T1
Valid prediction for snap_scaffold_8-snap.1446-T1
Valid prediction for snap_scaffold_8-snap.1425-T1
Valid prediction for snap_scaffold_8-snap.1450-T1
Couldn't classify 157731, 158207
Sorry, prediction pasa_asmbl_52988.p1 fails validation.
(ATG)	 TT	157731-158207	GA	ACG
Valid prediction for GlimmerHMM_glimmerT_20011-T1
Valid prediction for snap_scaffold_8-snap.1420-T1
Valid prediction for snap_scaffold_8-snap.1414-T1
Valid prediction for GlimmerHMM_glimmerT_20012-T1
Valid prediction for snap_scaffold_8-snap.1451-T1
Valid prediction for Augustus_model.g13323.t1
Couldn't classify 119547, 119891
Sorry, prediction pasa_asmbl_52986.p1 fails validation.
(GTC)	 CT	119547-119891	TA	AAT
Valid prediction for GlimmerHMM_glimmerT_20007-T1
Valid prediction for snap_scaffold_8-snap.1432-T1
Couldn't classify 162687, 162899
Couldn't classify 164793, 164834
Sorry, prediction pasa_asmbl_52989.p1 fails validation.
(GTG)	 AG	162687-162899	GT	AGG
(GCG)	 AG	163580-163720	GT	AGG
(GCG)	 AG	163837-163932	GT	AGG
(GGC)	 AG	164104-164265	GT	CAG
(CAC)	 AG	164793-164834	GG	ACG
-recovered pasa_asmbl_52989.p1, internal, 162687, 162899
-recovered pasa_asmbl_52989.p1, internal, 163580, 163720
-recovered pasa_asmbl_52989.p1, internal, 163837, 163932
-recovered pasa_asmbl_52989.p1, internal, 164104, 164265
Valid prediction for snap_scaffold_8-snap.1448-T1
Valid prediction for HiQ_model.g13309.t1
Valid prediction for snap_scaffold_8-snap.1430-T1
Valid prediction for CodingQuarry_transcript_59690-T1
Couldn't classify 167587, 168024
Sorry, prediction pasa_asmbl_53613.p2 fails validation.
(GGC)	 CC	167587-168024	CG	TCC
Valid prediction for GlimmerHMM_glimmerT_20026-T1
Valid prediction for snap_scaffold_8-snap.1418-T1
Valid prediction for snap_scaffold_8-snap.1445-T1
Valid prediction for Augustus_model.g13321.t1
Valid prediction for snap_scaffold_8-snap.1452-T1
Valid prediction for Augustus_model.g13324.t1
Valid prediction for GlimmerHMM_glimmerT_20020-T1
Valid prediction for GlimmerHMM_glimmerT_20027-T1
Valid prediction for Augustus_model.g13318.t1
Valid prediction for snap_scaffold_8-snap.1440-T1
Valid prediction for snap_scaffold_8-snap.1429-T1
Valid prediction for GlimmerHMM_glimmerT_20008-T1
Valid prediction for snap_scaffold_8-snap.1431-T1
Valid prediction for GlimmerHMM_glimmerT_20002-T1
Valid prediction for snap_scaffold_8-snap.1439-T1
Couldn't classify 106016, 106378
Sorry, prediction pasa_asmbl_51903.p2 fails validation.
(CCC)	 TA	106016-106378	GT	GAG
Couldn't classify 168182, 168551
Sorry, prediction pasa_asmbl_52990.p1 fails validation.
(CAG)	 TC	168182-168551	GT	AGG
(TCG)	 AG	169499-169664	GT	GGG
(GGA)	 AG	169967-170104	GT	AGG
(AAA)	 AG	170357-170483	AG	GAA
-recovered pasa_asmbl_52990.p1, terminal, 170357, 170483
-recovered pasa_asmbl_52990.p1, internal, 169499, 169664
-recovered pasa_asmbl_52990.p1, internal, 169967, 170104
Valid prediction for snap_scaffold_8-snap.1411-T1
Valid prediction for Augustus_model.g13316.t1
Valid prediction for GlimmerHMM_glimmerT_20016-T1
Valid prediction for snap_scaffold_8-snap.1433-T1
Valid prediction for CodingQuarry_transcript_59686-T1
Valid prediction for GlimmerHMM_glimmerT_20032-T1
Valid prediction for GlimmerHMM_glimmerT_20030-T1
Valid prediction for Augustus_model.g13317.t1
Valid prediction for Augustus_model.g13320.t1
Valid prediction for Augustus_model.g13315.t1
Valid prediction for snap_scaffold_8-snap.1438-T1
Valid prediction for pasa_asmbl_52984.p1
Valid prediction for snap_scaffold_8-snap.1435-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.1407-T1
Valid prediction for Augustus_model.g13308.t1
Valid prediction for GlimmerHMM_glimmerT_20023-T1
Valid prediction for CodingQuarry_transcript_59688-T1
Valid prediction for snap_scaffold_8-snap.1427-T1
Valid prediction for snap_scaffold_8-snap.1410-T1
Valid prediction for CodingQuarry_transcript_59691-T1
Valid prediction for snap_scaffold_8-snap.1421-T1
Couldn't classify 109279, 109401
Couldn't classify 113462, 113470
Sorry, prediction pasa_asmbl_51902.p1 fails validation.
(CTG)	 GG	109279-109401	GT	AGG
(GTC)	 AG	110694-110740	GT	AGG
(CGA)	 AG	111228-111348	GT	CGG
(GTG)	 AG	111452-111559	GT	AGG
(AAG)	 AG	111738-111866	GT	AGG
(CTC)	 AG	112075-112288	GT	AGG
(AGA)	 AG	112581-112707	GT	AGG
(TAT)	 AG	112812-112915	GT	TGG
(GAA)	 AG	113079-113281	GT	CTG
(GAC)	 AG	113462-113470	GG	ATG
-recovered pasa_asmbl_51902.p1, internal, 110694, 110740
-recovered pasa_asmbl_51902.p1, internal, 111228, 111348
-recovered pasa_asmbl_51902.p1, internal, 111452, 111559
-recovered pasa_asmbl_51902.p1, internal, 111738, 111866
-recovered pasa_asmbl_51902.p1, internal, 112075, 112288
-recovered pasa_asmbl_51902.p1, internal, 112581, 112707
-recovered pasa_asmbl_51902.p1, internal, 112812, 112915
-recovered pasa_asmbl_51902.p1, internal, 113079, 113281
Valid prediction for Augustus_model.g13310.t1
Valid prediction for GlimmerHMM_glimmerT_20015-T1
Valid prediction for snap_scaffold_8-snap.1404-T1
Valid prediction for GlimmerHMM_glimmerT_20009-T1
Valid prediction for pasa_asmbl_51911.p1
Valid prediction for Augustus_model.g13322.t1
Valid prediction for GlimmerHMM_glimmerT_20018-T1
Valid prediction for GlimmerHMM_glimmerT_20024-T1
Valid prediction for snap_scaffold_8-snap.1416-T1
Valid prediction for GlimmerHMM_glimmerT_20022-T1
Valid prediction for snap_scaffold_8-snap.1415-T1
Valid prediction for snap_scaffold_8-snap.1443-T1
Valid prediction for snap_scaffold_8-snap.1412-T1
Valid prediction for snap_scaffold_8-snap.1405-T1
Valid prediction for HiQ_model.g13312.t1
Valid prediction for snap_scaffold_8-snap.1437-T1
Valid prediction for snap_scaffold_8-snap.1442-T1
Valid prediction for HiQ_model.g13313.t1
Valid prediction for GlimmerHMM_glimmerT_20013-T1
Valid prediction for snap_scaffold_8-snap.1428-T1
Valid prediction for snap_scaffold_8-snap.1423-T1
Valid prediction for Augustus_model.g13311.t1
Valid prediction for CodingQuarry_transcript_59689-T1
Valid prediction for GlimmerHMM_glimmerT_20014-T1
Couldn't classify 145943, 146022
Sorry, prediction pasa_asmbl_51900.p1 fails validation.
(CTC)	 TC	145943-146022	GT	AGG
(CTC)	 AG	146157-146265	GT	AGG
(AAC)	 AG	146365-146523	GT	AGG
(GAC)	 AG	147605-147751	GT	AGG
(CTC)	 AG	147855-147962	GT	AGG
(GAC)	 AG	148167-148281	GT	GGG
(GGA)	 AG	148893-149017	GT	AGG
(GTT)	 AG	149250-149396	GG	GAG
-recovered pasa_asmbl_51900.p1, terminal, 149250, 149396
-recovered pasa_asmbl_51900.p1, internal, 146157, 146265
-recovered pasa_asmbl_51900.p1, internal, 146365, 146523
-recovered pasa_asmbl_51900.p1, internal, 147605, 147751
-recovered pasa_asmbl_51900.p1, internal, 147855, 147962
-recovered pasa_asmbl_51900.p1, internal, 148167, 148281
-recovered pasa_asmbl_51900.p1, internal, 148893, 149017
Valid prediction for snap_scaffold_8-snap.1409-T1
Valid prediction for pasa_asmbl_51919.p1
Valid prediction for snap_scaffold_8-snap.1436-T1
Valid prediction for GlimmerHMM_glimmerT_20029-T1
Valid prediction for snap_scaffold_8-snap.1426-T1
Couldn't classify 113462, 113608
Sorry, prediction pasa_asmbl_51901.p1 fails validation.
(GAC)	 AG	113462-113608	GT	AGG
(GGC)	 AG	113831-113986	GC	AGG
-recovered pasa_asmbl_51901.p1, terminal, 113831, 113986
-recovered pasa_asmbl_51901.p1, internal, 113462, 113608
-recovered pasa_asmbl_51901.p1, internal, 113831, 113986
Valid prediction for snap_scaffold_8-snap.1422-T1
Valid prediction for GlimmerHMM_glimmerT_20006-T1
Valid prediction for GlimmerHMM_glimmerT_20017-T1
Couldn't classify 96114, 96305
Sorry, prediction pasa_asmbl_51905.p1 fails validation.
(CTC)	 CC	96114-96305	GC	AGG
(ATT)	 AG	96430-96512	GT	AAG
(AAT)	 AG	96655-96791	GT	AGG
(CGA)	 AG	96873-96961	GT	AGG
(TGT)	 AG	97114-97257	GT	AGG
(ATG)	 AG	97346-97522	GT	AGG
(ATC)	 AG	97620-97733	TA	AGT
-recovered pasa_asmbl_51905.p1, initial, 97346, 97522
-recovered pasa_asmbl_51905.p1, terminal, 97620, 97733
-recovered pasa_asmbl_51905.p1, internal, 96430, 96512
-recovered pasa_asmbl_51905.p1, internal, 96655, 96791
-recovered pasa_asmbl_51905.p1, internal, 96873, 96961
-recovered pasa_asmbl_51905.p1, internal, 97114, 97257
-recovered pasa_asmbl_51905.p1, internal, 97346, 97522
Valid prediction for snap_scaffold_8-snap.1424-T1
Valid prediction for snap_scaffold_8-snap.1434-T1
Valid prediction for snap_scaffold_8-snap.1406-T1
Valid prediction for snap_scaffold_8-snap.1449-T1
Valid prediction for snap_scaffold_8-snap.1413-T1
Valid prediction for snap_scaffold_8-snap.1447-T1
Valid prediction for snap_scaffold_8-snap.1419-T1
Valid prediction for GlimmerHMM_glimmerT_20021-T1
Valid prediction for HiQ_model.g13314.t1
Valid prediction for snap_scaffold_8-snap.1408-T1
Valid prediction for snap_scaffold_8-snap.1441-T1
Valid prediction for GlimmerHMM_glimmerT_20003-T1
Valid prediction for pasa_asmbl_51904.p1
Valid prediction for GlimmerHMM_glimmerT_20004-T1
Valid prediction for HiQ_model.g13319.t1
Valid prediction for GlimmerHMM_glimmerT_20028-T1
Valid prediction for GlimmerHMM_glimmerT_20025-T1
Valid prediction for GlimmerHMM_glimmerT_20019-T1
Valid prediction for snap_scaffold_8-snap.1417-T1
Valid prediction for GlimmerHMM_glimmerT_20010-T1
Valid prediction for GlimmerHMM_glimmerT_20031-T1
Valid prediction for CodingQuarry_transcript_59692-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 71841, rend_intergenic: 69339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83125, rend_intergenic: 80817  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104502, rend_intergenic: 97527  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133940, rend_intergenic: 130191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136699, rend_intergenic: 134232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170903, rend_intergenic: 164802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195890, rend_intergenic: 189588  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198783, rend_intergenic: 197827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 205640
-exon list size: 412


building trellis

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10.4    
10.6    
10.9    
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11.4    
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11.8    
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12.6    
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13.5    
13.8    
14.0    
14.3    
14.5    
14.7    
15.0    
15.2    
15.5    
15.7    
15.9    
16.2    
16.4    
16.7    
16.9    
17.1    
17.4    
17.6    
17.9    
18.1    
18.4    
18.6    
18.8    
19.1    
19.3    
19.6    
19.8    
20.0    
20.3    
20.5    
20.8    
21.0    
21.3    
21.5    
21.7    
22.0    
22.2    
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22.7    
22.9    
23.2    
23.4    
23.7    
23.9    
24.2    
24.4    
24.6    
24.9    
25.1    
25.4    
25.6    
25.8    
26.1    
26.3    
26.6    
26.8    
27.1    
27.3    
27.5    
27.8    
28.0    
28.3    
28.5    
28.7    
29.0    
29.2    
29.5    
29.7    
30.0    
30.2    
30.4    
30.7    
30.9    
31.2    
31.4    
31.6    
31.9    
32.1    
32.4    
32.6    
32.9    
33.1    
33.3    
33.6    
33.8    
34.1    
34.3    
34.5    
34.8    
35.0    
35.3    
35.5    
35.7    
36.0    
36.2    
36.5    
36.7    
37.0    
37.2    
37.4    
37.7    
37.9    
38.2    
38.4    
38.6    
38.9    
39.1    
39.4    
39.6    
39.9    
40.1    
40.3    
40.6    
40.8    
41.1    
41.3    
41.5    
41.8    
42.0    
42.3    
42.5    
42.8    
43.0    
43.2    
43.5    
43.7    
44.0    
44.2    
44.4    
44.7    
44.9    
45.2    
45.4    
45.7    
45.9    
46.1    
46.4    
46.6    
46.9    
47.1    
47.3    
47.6    
47.8    
48.1    
48.3    
48.6    
48.8    
49.0    
49.3    
49.5    
49.8    
50.0    
50.2    
50.5    
50.7    
51.0    
51.2    
51.4    
51.7    
51.9    
52.2    
52.4    
52.7    
52.9    
53.1    
53.4    
53.6    
53.9    
54.1    
54.3    
54.6    
54.8    
55.1    
55.3    
55.6    
55.8    
56.0    
56.3    
56.5    
56.8    
57.0    
57.2    
57.5    
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58.0    
58.2    
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58.7    
58.9    
59.2    
59.4    
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59.9    
60.1    
60.4    
60.6    
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61.4    
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64.3    
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65.0    
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65.9    
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67.4    
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68.1    
68.4    
68.6    
68.8    
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69.3    
69.6    
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70.3    
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70.8    
71.0    
71.3    
71.5    
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72.0    
72.2    
72.5    
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72.9    
73.2    
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73.7    
73.9    
74.2    
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74.6    
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75.1    
75.4    
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76.1    
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77.3    
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78.0    
78.3    
78.5    
78.7    
79.0    
79.2    
79.5    
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80.0    
80.2    
80.4    
80.7    
80.9    
81.2    
81.4    
81.6    
81.9    
82.1    
82.4    
82.6    
82.9    
83.1    
83.3    
83.6    
83.8    
84.1    
84.3    
84.5    
84.8    
85.0    
85.3    
85.5    
85.7    
86.0    
86.2    
86.5    
86.7    
87.0    
87.2    
87.4    
87.7    
87.9    
88.2    
88.4    
88.6    
88.9    
89.1    
89.4    
89.6    
89.9    
90.1    
90.3    
90.6    
90.8    
91.1    
91.3    
91.5    
91.8    
92.0    
92.3    
92.5    
92.8    
93.0    
93.2    
93.5    
93.7    
94.0    
94.2    
94.4    
94.7    
94.9    
95.2    
95.4    
95.7    
95.9    
96.1    
96.4    
96.6    
96.9    
97.1    
97.3    
97.6    
97.8    
98.1    
98.3    
98.6    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 35 predictions from path traversal
Error with prediction: snap lend_intergenic: 71841, rend_intergenic: 69339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83125, rend_intergenic: 80817  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104502, rend_intergenic: 97527  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133940, rend_intergenic: 130191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136699, rend_intergenic: 134232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170903, rend_intergenic: 164802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195890, rend_intergenic: 189588  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198783, rend_intergenic: 197827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 30 predictions persist after filtering for low support