-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_6806654-7078715

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_19955-T1
Valid prediction for Augustus_model.g13294.t1
Valid prediction for pasa_asmbl_52968.p1
Valid prediction for GlimmerHMM_glimmerT_19961-T1
Valid prediction for snap_scaffold_8-snap.1352-T1
Valid prediction for Augustus_model.g13296.t1
Valid prediction for snap_scaffold_8-snap.1361-T1
Valid prediction for snap_scaffold_8-snap.1359-T1
Valid prediction for GlimmerHMM_glimmerT_19971-T1
Couldn't classify 119362, 119724
Sorry, prediction pasa_asmbl_52975.p2 fails validation.
(ATG)	 AC	117117-117146	GT	GGG
(CCT)	 AG	119362-119724	TC	TGT
-recovered pasa_asmbl_52975.p2, initial, 117117, 117146
Valid prediction for snap_scaffold_8-snap.1370-T1
Valid prediction for GlimmerHMM_glimmerT_19958-T1
Valid prediction for GlimmerHMM_glimmerT_19950-T1
Valid prediction for Augustus_model.g13285.t1
Valid prediction for GlimmerHMM_glimmerT_19956-T1
Valid prediction for snap_scaffold_8-snap.1358-T1
Valid prediction for pasa_asmbl_52978.p1
Valid prediction for CodingQuarry_transcript_59683-T1
Valid prediction for GlimmerHMM_glimmerT_19953-T1
Valid prediction for GlimmerHMM_glimmerT_19969-T1
Valid prediction for snap_scaffold_8-snap.1364-T1
Valid prediction for GlimmerHMM_glimmerT_19960-T1
Valid prediction for GlimmerHMM_glimmerT_19967-T1
Couldn't classify 143692, 144211
Couldn't classify 146074, 146219
Sorry, prediction pasa_asmbl_52977.p1 fails validation.
(AAC)	 CA	143692-144211	GT	GGG
(TGC)	 AG	144340-144503	GT	AGG
(GAC)	 AG	144606-144785	GT	AGG
(CAG)	 AG	145685-145862	GT	CGG
(AGT)	 AG	146074-146219	CG	AAC
-recovered pasa_asmbl_52977.p1, internal, 144340, 144503
-recovered pasa_asmbl_52977.p1, internal, 144606, 144785
-recovered pasa_asmbl_52977.p1, internal, 145685, 145862
Valid prediction for snap_scaffold_8-snap.1350-T1
Valid prediction for snap_scaffold_8-snap.1354-T1
Valid prediction for snap_scaffold_8-snap.1345-T1
Valid prediction for GlimmerHMM_glimmerT_19975-T1
Valid prediction for snap_scaffold_8-snap.1363-T1
Couldn't classify 103336, 103665
Sorry, prediction pasa_asmbl_52974.p1 fails validation.
(CCT)	 GG	103336-103665	CC	ACC
Valid prediction for snap_scaffold_8-snap.1339-T1
Valid prediction for GlimmerHMM_glimmerT_19954-T1
Valid prediction for snap_scaffold_8-snap.1342-T1
Valid prediction for GlimmerHMM_glimmerT_19973-T1
Valid prediction for HiQ_model.g13293.t1
Valid prediction for GlimmerHMM_glimmerT_19963-T1
Valid prediction for GlimmerHMM_glimmerT_19965-T1
Valid prediction for snap_scaffold_8-snap.1347-T1
Valid prediction for Augustus_model.g13290.t1
Valid prediction for snap_scaffold_8-snap.1368-T1
Valid prediction for GlimmerHMM_glimmerT_19972-T1
Valid prediction for Augustus_model.g13287.t1
Valid prediction for snap_scaffold_8-snap.1353-T1
Valid prediction for Augustus_model.g13295.t1
Couldn't classify 156125, 156289
Couldn't classify 157070, 157128
Sorry, prediction pasa_asmbl_52981.p1 fails validation.
(GTC)	 AG	156125-156289	GT	AGG
(GTG)	 AG	156479-156569	GT	AGG
(GTC)	 AG	156713-156889	GT	AGG
(TGC)	 AG	157070-157128	AG	GTA
-recovered pasa_asmbl_52981.p1, internal, 156125, 156289
-recovered pasa_asmbl_52981.p1, internal, 156479, 156569
-recovered pasa_asmbl_52981.p1, internal, 156713, 156889
Couldn't classify 158219, 158227
Sorry, prediction pasa_asmbl_52982.p1 fails validation.
(AGG)	 CC	158219-158227	GT	GGG
(GTT)	 AG	158454-158621	GT	GGG
(TGT)	 AG	158940-159164	AT	GAA
-recovered pasa_asmbl_52982.p1, terminal, 158940, 159164
-recovered pasa_asmbl_52982.p1, internal, 158454, 158621
Valid prediction for Augustus_model.g13292.t1
Valid prediction for HiQ_model.g13289.t1
Valid prediction for CodingQuarry_transcript_59682-T1
Valid prediction for snap_scaffold_8-snap.1357-T1
Couldn't classify 143291, 143604
Sorry, prediction pasa_asmbl_52976.p1 fails validation.
(ATG)	 AG	130223-130309	GT	AGG
(GAG)	 AG	130652-130789	GT	TGG
(GAG)	 AG	131063-131184	GT	AGG
(ACG)	 AG	132205-132448	GT	AGG
(GGC)	 AG	133445-133621	GT	TGG
(GAA)	 AG	133702-133845	GT	AGG
(GTC)	 AG	133965-134220	GT	AGG
(GGG)	 AG	134744-134954	GT	AGG
(GTA)	 AG	136088-136283	GT	AGG
(GCC)	 AG	136379-136570	GT	GAG
(CCT)	 AG	137072-137257	GT	AGG
(GCC)	 AG	137446-137556	GT	GAG
(AAC)	 AG	137726-137934	GT	GGG
(GTG)	 AG	138079-138278	GT	GGG
(GTC)	 AG	138393-138552	GT	AAG
(GGT)	 AG	140579-140668	GT	AGG
(TGA)	 AG	141366-141469	GT	CGG
(GTT)	 AG	141608-141725	GT	GGG
(GGA)	 AG	142004-142061	GT	AGG
(GAT)	 AG	142242-142290	GT	AGG
(ACG)	 AG	142407-142647	GT	AGG
(GTG)	 AG	142769-142974	GT	AGG
(ACT)	 AG	143291-143604	CA	CCC
-recovered pasa_asmbl_52976.p1, initial, 130223, 130309
-recovered pasa_asmbl_52976.p1, internal, 130223, 130309
-recovered pasa_asmbl_52976.p1, internal, 130652, 130789
-recovered pasa_asmbl_52976.p1, internal, 131063, 131184
-recovered pasa_asmbl_52976.p1, internal, 132205, 132448
-recovered pasa_asmbl_52976.p1, internal, 133445, 133621
-recovered pasa_asmbl_52976.p1, internal, 133702, 133845
-recovered pasa_asmbl_52976.p1, internal, 133965, 134220
-recovered pasa_asmbl_52976.p1, internal, 134744, 134954
-recovered pasa_asmbl_52976.p1, internal, 136088, 136283
-recovered pasa_asmbl_52976.p1, internal, 136379, 136570
-recovered pasa_asmbl_52976.p1, internal, 137072, 137257
-recovered pasa_asmbl_52976.p1, internal, 137446, 137556
-recovered pasa_asmbl_52976.p1, internal, 137726, 137934
-recovered pasa_asmbl_52976.p1, internal, 138079, 138278
-recovered pasa_asmbl_52976.p1, internal, 138393, 138552
-recovered pasa_asmbl_52976.p1, internal, 140579, 140668
-recovered pasa_asmbl_52976.p1, internal, 141366, 141469
-recovered pasa_asmbl_52976.p1, internal, 141608, 141725
-recovered pasa_asmbl_52976.p1, internal, 142004, 142061
-recovered pasa_asmbl_52976.p1, internal, 142242, 142290
-recovered pasa_asmbl_52976.p1, internal, 142407, 142647
-recovered pasa_asmbl_52976.p1, internal, 142769, 142974

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_19951-T1
Valid prediction for snap_scaffold_8-snap.1366-T1
Valid prediction for GlimmerHMM_glimmerT_19974-T1
Valid prediction for snap_scaffold_8-snap.1340-T1
Valid prediction for snap_scaffold_8-snap.1341-T1
Valid prediction for snap_scaffold_8-snap.1362-T1
Valid prediction for GlimmerHMM_glimmerT_19962-T1
Valid prediction for GlimmerHMM_glimmerT_19959-T1
Valid prediction for GlimmerHMM_glimmerT_19949-T1
Valid prediction for GlimmerHMM_glimmerT_19957-T1
Valid prediction for snap_scaffold_8-snap.1351-T1
Valid prediction for snap_scaffold_8-snap.1348-T1
Valid prediction for Augustus_model.g13288.t1
Valid prediction for snap_scaffold_8-snap.1367-T1
Valid prediction for GlimmerHMM_glimmerT_19964-T1
Valid prediction for GlimmerHMM_glimmerT_19952-T1
Valid prediction for snap_scaffold_8-snap.1343-T1
Valid prediction for GlimmerHMM_glimmerT_19970-T1
Valid prediction for GlimmerHMM_glimmerT_19948-T1
Valid prediction for Augustus_model.g13284.t1
Valid prediction for snap_scaffold_8-snap.1360-T1
Valid prediction for snap_scaffold_8-snap.1349-T1
Valid prediction for GlimmerHMM_glimmerT_19968-T1
Valid prediction for Augustus_model.g13291.t1
Valid prediction for Augustus_model.g13283.t1
Valid prediction for Augustus_model.g13286.t1
Valid prediction for snap_scaffold_8-snap.1344-T1
Valid prediction for snap_scaffold_8-snap.1355-T1
Valid prediction for snap_scaffold_8-snap.1356-T1
Valid prediction for snap_scaffold_8-snap.1365-T1
Couldn't classify 246501, 247251
Couldn't classify 251681, 251760
Sorry, prediction pasa_asmbl_51892.p1 fails validation.
(TTG)	 AC	246501-247251	GT	AGG
(GTG)	 AG	249206-249331	GT	AGG
(ACG)	 AG	251681-251760	GT	AGG
-recovered pasa_asmbl_51892.p1, internal, 249206, 249331
-recovered pasa_asmbl_51892.p1, internal, 251681, 251760
Valid prediction for GlimmerHMM_glimmerT_19966-T1
Valid prediction for snap_scaffold_8-snap.1346-T1
Valid prediction for snap_scaffold_8-snap.1369-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13039, rend_intergenic: 6718  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19436, rend_intergenic: 15759  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20501, rend_intergenic: 19496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32958, rend_intergenic: 29479  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105545, rend_intergenic: 103672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117824, rend_intergenic: 113337  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138556, rend_intergenic: 125139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148343, rend_intergenic: 139363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 255173, rend_intergenic: 252295  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 272062
-exon list size: 358


building trellis

0.3    
0.6    
0.8    
1.1    
1.4    
1.7    
1.9    
2.2    
2.5    
2.8    
3.1    
3.3    
3.6    
3.9    
4.2    
4.4    
4.7    
5.0    
5.3    
5.6    
5.8    
6.1    
6.4    
6.7    
6.9    
7.2    
7.5    
7.8    
8.1    
8.3    
8.6    
8.9    
9.2    
9.4    
9.7    
10.0    
10.3    
10.6    
10.8    
11.1    
11.4    
11.7    
11.9    
12.2    
12.5    
12.8    
13.1    
13.3    
13.6    
13.9    
14.2    
14.4    
14.7    
15.0    
15.3    
15.6    
15.8    
16.1    
16.4    
16.7    
16.9    
17.2    
17.5    
17.8    
18.1    
18.3    
18.6    
18.9    
19.2    
19.4    
19.7    
20.0    
20.3    
20.6    
20.8    
21.1    
21.4    
21.7    
21.9    
22.2    
22.5    
22.8    
23.1    
23.3    
23.6    
23.9    
24.2    
24.4    
24.7    
25.0    
25.3    
25.6    
25.8    
26.1    
26.4    
26.7    
26.9    
27.2    
27.5    
27.8    
28.1    
28.3    
28.6    
28.9    
29.2    
29.4    
29.7    
30.0    
30.3    
30.6    
30.8    
31.1    
31.4    
31.7    
31.9    
32.2    
32.5    
32.8    
33.1    
33.3    
33.6    
33.9    
34.2    
34.4    
34.7    
35.0    
35.3    
35.6    
35.8    
36.1    
36.4    
36.7    
36.9    
37.2    
37.5    
37.8    
38.1    
38.3    
38.6    
38.9    
39.2    
39.4    
39.7    
40.0    
40.3    
40.6    
40.8    
41.1    
41.4    
41.7    
41.9    
42.2    
42.5    
42.8    
43.1    
43.3    
43.6    
43.9    
44.2    
44.4    
44.7    
45.0    
45.3    
45.6    
45.8    
46.1    
46.4    
46.7    
46.9    
47.2    
47.5    
47.8    
48.1    
48.3    
48.6    
48.9    
49.2    
49.4    
49.7    
50.0    
50.3    
50.6    
50.8    
51.1    
51.4    
51.7    
51.9    
52.2    
52.5    
52.8    
53.1    
53.3    
53.6    
53.9    
54.2    
54.4    
54.7    
55.0    
55.3    
55.6    
55.8    
56.1    
56.4    
56.7    
56.9    
57.2    
57.5    
57.8    
58.1    
58.3    
58.6    
58.9    
59.2    
59.4    
59.7    
60.0    
60.3    
60.6    
60.8    
61.1    
61.4    
61.7    
61.9    
62.2    
62.5    
62.8    
63.1    
63.3    
63.6    
63.9    
64.2    
64.4    
64.7    
65.0    
65.3    
65.6    
65.8    
66.1    
66.4    
66.7    
66.9    
67.2    
67.5    
67.8    
68.1    
68.3    
68.6    
68.9    
69.2    
69.4    
69.7    
70.0    
70.3    
70.6    
70.8    
71.1    
71.4    
71.7    
71.9    
72.2    
72.5    
72.8    
73.1    
73.3    
73.6    
73.9    
74.2    
74.4    
74.7    
75.0    
75.3    
75.6    
75.8    
76.1    
76.4    
76.7    
76.9    
77.2    
77.5    
77.8    
78.1    
78.3    
78.6    
78.9    
79.2    
79.4    
79.7    
80.0    
80.3    
80.6    
80.8    
81.1    
81.4    
81.7    
81.9    
82.2    
82.5    
82.8    
83.1    
83.3    
83.6    
83.9    
84.2    
84.4    
84.7    
85.0    
85.3    
85.6    
85.8    
86.1    
86.4    
86.7    
86.9    
87.2    
87.5    
87.8    
88.1    
88.3    
88.6    
88.9    
89.2    
89.4    
89.7    
90.0    
90.3    
90.6    
90.8    
91.1    
91.4    
91.7    
91.9    
92.2    
92.5    
92.8    
93.1    
93.3    
93.6    
93.9    
94.2    
94.4    
94.7    
95.0    
95.3    
95.6    
95.8    
96.1    
96.4    
96.7    
96.9    
97.2    
97.5    
97.8    
98.1    
98.3    
98.6    
98.9    
99.2    
99.4    
99.7    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 13039, rend_intergenic: 6718  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19436, rend_intergenic: 15759  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20501, rend_intergenic: 19496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32958, rend_intergenic: 29479  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105545, rend_intergenic: 103672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117824, rend_intergenic: 113337  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138556, rend_intergenic: 125139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148343, rend_intergenic: 139363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 255173, rend_intergenic: 252295  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support