-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_6649095-6810470

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g13279.t1
Valid prediction for snap_scaffold_8-snap.1327-T1
Valid prediction for GlimmerHMM_glimmerT_19945-T1
Valid prediction for GlimmerHMM_glimmerT_19943-T1
Valid prediction for Augustus_model.g13282.t1
Valid prediction for Augustus_model.g13275.t1
Valid prediction for snap_scaffold_8-snap.1337-T1
Valid prediction for Augustus_model.g13274.t1
Valid prediction for GlimmerHMM_glimmerT_19944-T1
Valid prediction for snap_scaffold_8-snap.1311-T1
Valid prediction for pasa_asmbl_52967.p1
Valid prediction for snap_scaffold_8-snap.1313-T1
Valid prediction for Augustus_model.g13281.t1
Valid prediction for GlimmerHMM_glimmerT_19929-T1
Valid prediction for GlimmerHMM_glimmerT_19931-T1
Valid prediction for GlimmerHMM_glimmerT_19936-T1
Valid prediction for snap_scaffold_8-snap.1318-T1
Valid prediction for Augustus_model.g13271.t1
Valid prediction for snap_scaffold_8-snap.1316-T1
Valid prediction for Augustus_model.g13269.t1
Valid prediction for snap_scaffold_8-snap.1329-T1
Valid prediction for GlimmerHMM_glimmerT_19935-T1
Valid prediction for snap_scaffold_8-snap.1317-T1
Valid prediction for GlimmerHMM_glimmerT_19930-T1
Valid prediction for Augustus_model.g13273.t1
Valid prediction for snap_scaffold_8-snap.1330-T1
Valid prediction for Augustus_model.g13270.t1
Valid prediction for GlimmerHMM_glimmerT_19933-T1
Valid prediction for snap_scaffold_8-snap.1338-T1
Valid prediction for snap_scaffold_8-snap.1332-T1
Valid prediction for snap_scaffold_8-snap.1310-T1
Valid prediction for snap_scaffold_8-snap.1319-T1
Valid prediction for snap_scaffold_8-snap.1333-T1
Valid prediction for CodingQuarry_transcript_59681-T1
Valid prediction for snap_scaffold_8-snap.1325-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_19937-T1
Valid prediction for Augustus_model.g13280.t1
Valid prediction for GlimmerHMM_glimmerT_19947-T1
Valid prediction for snap_scaffold_8-snap.1324-T1
Valid prediction for GlimmerHMM_glimmerT_19932-T1
Valid prediction for snap_scaffold_8-snap.1315-T1
Valid prediction for GlimmerHMM_glimmerT_19934-T1
Valid prediction for snap_scaffold_8-snap.1320-T1
Valid prediction for Augustus_model.g13267.t1
Valid prediction for snap_scaffold_8-snap.1331-T1
Valid prediction for snap_scaffold_8-snap.1312-T1
Valid prediction for GlimmerHMM_glimmerT_19948-T1
Valid prediction for snap_scaffold_8-snap.1335-T1
Valid prediction for Augustus_model.g13272.t1
Valid prediction for GlimmerHMM_glimmerT_19938-T1
Valid prediction for GlimmerHMM_glimmerT_19939-T1
Valid prediction for snap_scaffold_8-snap.1328-T1
Valid prediction for snap_scaffold_8-snap.1314-T1
Valid prediction for snap_scaffold_8-snap.1323-T1
Valid prediction for GlimmerHMM_glimmerT_19928-T1
Valid prediction for Augustus_model.g13278.t1
Valid prediction for Augustus_model.g13276.t1
Valid prediction for snap_scaffold_8-snap.1322-T1
Valid prediction for Augustus_model.g13277.t1
Valid prediction for snap_scaffold_8-snap.1326-T1
Valid prediction for snap_scaffold_8-snap.1334-T1
Valid prediction for GlimmerHMM_glimmerT_19942-T1
Valid prediction for GlimmerHMM_glimmerT_19941-T1
Valid prediction for snap_scaffold_8-snap.1321-T1
Valid prediction for GlimmerHMM_glimmerT_19946-T1
Valid prediction for Augustus_model.g13268.t1
Valid prediction for GlimmerHMM_glimmerT_19940-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 26401, rend_intergenic: 26285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36333, rend_intergenic: 32435  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45426, rend_intergenic: 39145  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89592, rend_intergenic: 87576  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91915, rend_intergenic: 89605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97478, rend_intergenic: 93805  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112770, rend_intergenic: 98099  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116376, rend_intergenic: 113248  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128478, rend_intergenic: 117431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 161376
-exon list size: 226


building trellis

0.4    
0.9    
1.3    
1.8    
2.2    
2.6    
3.1    
3.5    
3.9    
4.4    
4.8    
5.3    
5.7    
6.1    
6.6    
7.0    
7.5    
7.9    
8.3    
8.8    
9.2    
9.6    
10.1    
10.5    
11.0    
11.4    
11.8    
12.3    
12.7    
13.2    
13.6    
14.0    
14.5    
14.9    
15.4    
15.8    
16.2    
16.7    
17.1    
17.5    
18.0    
18.4    
18.9    
19.3    
19.7    
20.2    
20.6    
21.1    
21.5    
21.9    
22.4    
22.8    
23.2    
23.7    
24.1    
24.6    
25.0    
25.4    
25.9    
26.3    
26.8    
27.2    
27.6    
28.1    
28.5    
28.9    
29.4    
29.8    
30.3    
30.7    
31.1    
31.6    
32.0    
32.5    
32.9    
33.3    
33.8    
34.2    
34.6    
35.1    
35.5    
36.0    
36.4    
36.8    
37.3    
37.7    
38.2    
38.6    
39.0    
39.5    
39.9    
40.4    
40.8    
41.2    
41.7    
42.1    
42.5    
43.0    
43.4    
43.9    
44.3    
44.7    
45.2    
45.6    
46.1    
46.5    
46.9    
47.4    
47.8    
48.2    
48.7    
49.1    
49.6    
50.0    
50.4    
50.9    
51.3    
51.8    
52.2    
52.6    
53.1    
53.5    
53.9    
54.4    
54.8    
55.3    
55.7    
56.1    
56.6    
57.0    
57.5    
57.9    
58.3    
58.8    
59.2    
59.6    
60.1    
60.5    
61.0    
61.4    
61.8    
62.3    
62.7    
63.2    
63.6    
64.0    
64.5    
64.9    
65.4    
65.8    
66.2    
66.7    
67.1    
67.5    
68.0    
68.4    
68.9    
69.3    
69.7    
70.2    
70.6    
71.1    
71.5    
71.9    
72.4    
72.8    
73.2    
73.7    
74.1    
74.6    
75.0    
75.4    
75.9    
76.3    
76.8    
77.2    
77.6    
78.1    
78.5    
78.9    
79.4    
79.8    
80.3    
80.7    
81.1    
81.6    
82.0    
82.5    
82.9    
83.3    
83.8    
84.2    
84.6    
85.1    
85.5    
86.0    
86.4    
86.8    
87.3    
87.7    
88.2    
88.6    
89.0    
89.5    
89.9    
90.4    
90.8    
91.2    
91.7    
92.1    
92.5    
93.0    
93.4    
93.9    
94.3    
94.7    
95.2    
95.6    
96.1    
96.5    
96.9    
97.4    
97.8    
98.2    
98.7    
99.1    
99.6    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 26401, rend_intergenic: 26285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36333, rend_intergenic: 32435  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45426, rend_intergenic: 39145  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89592, rend_intergenic: 87576  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91915, rend_intergenic: 89605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97478, rend_intergenic: 93805  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112770, rend_intergenic: 98099  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116376, rend_intergenic: 113248  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128478, rend_intergenic: 117431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 16889
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 16630
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 4489 - 16630
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support